Rmu_sc0007784.1_g000006

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007784.1
OG0000371
Physical Location & Seq
Forward (+)
18596 .. 18998
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007784.1_g000006.1.cds

Sequence Viewer

Length: 291 bp
atggatcattatgttccggtgggtgtgagattccatccgactgatgaagaattgatcgagcactacctctacctcaagaataatcatggcttggcgtcagcgacaccatccttgctacttcctgagtttgatttgtacggaggagaatcagtagaagctctcgaagcttcctcggagatcttctctggccgaggccgcaccgtctacaagacctttcgtatgtcctgtattgtcttccgcgctctcgcctctaaaggcatgctcaacgacatcaagaaagcctcctggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

6.04

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 240
AciI CCGC 2 cut(s) 196, 238
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 137
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 158, 167
AluI AGCT 2 cut(s) 158, 167
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 187, 193
AspLEI GCGC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 2 cut(s) 42, 115
BciT130I CCWGG 1 cut(s) 286
BglII AGATCT 1 cut(s) 177
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 171, 190
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 171, 190
BseGI GGATG 2 cut(s) 34, 107
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 189, 195
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 17
BsnI GGCC 2 cut(s) 189, 195
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 4, 54, 177
BspACI CCGC 2 cut(s) 196, 238
BspANI GGCC 2 cut(s) 189, 195
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 240
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 171, 190
BssMI GATC 3 cut(s) 4, 54, 177
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 34, 107
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 3 cut(s) 7, 57, 180
BstMBI GATC 3 cut(s) 4, 54, 177
BstMWI GCNNNNNNNGC 2 cut(s) 164, 195
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 284
BstUI CGCG 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 2 cut(s) 189, 195
BtsCI GGATG 2 cut(s) 34, 107
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 242
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 86, 259
CviJI RGCY 6 cut(s) 90, 158, 167, 189, 195, 281
CviKI_1 RGCY 6 cut(s) 90, 158, 167, 189, 195, 281
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 6, 56, 179
DpnII GATC 3 cut(s) 4, 54, 177
EaeI YGGCCR 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 89, 262
FaiI YATR 4 cut(s) 12, 87, 221, 260
FatI CATG 2 cut(s) 85, 258
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 2 cut(s) 21, 94
Fsp4HI GCNGC 1 cut(s) 196
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 189, 195
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 89, 262
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 30, 146
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 39, 175
Hpy188III TCNNGA 4 cut(s) 76, 122, 161, 274
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 195
HpyF3I CTNAG 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 89, 262
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 4, 54, 177
LpnPI CCDG 5 cut(s) 30, 135, 171, 238, 271
MalI GATC 3 cut(s) 6, 56, 179
MboI GATC 3 cut(s) 4, 54, 177
MboII GAAGA 3 cut(s) 59, 172, 226
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 6 cut(s) 77, 83, 134, 181, 185, 259
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 164, 195
NdeII GATC 3 cut(s) 4, 54, 177
NlaIII CATG 2 cut(s) 89, 262
NmeAIII GCCGAG 1 cut(s) 215
NspI RCATGY 1 cut(s) 262
PaeI GCATGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 30, 146
PkrI GCNGC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 4, 54, 177
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 63
SetI ASST 5 cut(s) 69, 75, 160, 169, 215
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 262
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 196, 238
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 57, 162
TasI AATT 1 cut(s) 50
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 2 cut(s) 30, 146
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 153
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.