Prupe.6G057300_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000371
Physical Location & Seq
Forward (+)
4012836 .. 4014128
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G057300.1

Sequence Viewer

Length: 984 bp
ATGACTAATTATAGTGGTAATCGGCTGGTGGGTTTTAGGTTTCACCCTACCGATCAAGAACTCATCAGTTACTTCCTCTACAAGAAAGTGATAGCCAAGCAGCCATTAATGGCGTTGTACAGCAACATTGTGCATGACTTCAATCTTTTGGGCGAAACAGAGCCCTGGGTGGTCTGGGATATCTTCGGAGGACCTGACCTCATTGACGAAGACTTGTATTTCTTCTCGGAGCTCAAGAATTTAAGCCCAAAGGGTTCGCGCATCAAACGCAAGATTGAGGCCGGAGGTACTTGGAGCGAAGCCTTCTCCAAAAAGGTTTACGACGAGACGACTGGAAACCCTATCGGGCGAAAAAGGAATTTGCGGTACGAGAACGAAGGGTGTGAGCACCACGGCAAGTGGCTGTTAGAAGAATATAGTCTTGTTGTTGATCAAGAGACACAAAAGATTGTGCTATGCCGACTTAAAAAGAACAACAGGGTTTGGAACAAAATAAATAATTCAACTCAAGAATTGAAGGAGAAACCCTCAAACAAGAAGGCAAGAAAAGGATTGGGATCACCAAGGATCAAGATTGAGGATGAGGAACCACACAGAACTTCTGGCCTAAGTACCGTCTATAATAATCTTGATCAAGAGTTGATAATCGACACTAATTATAATGCGATTTCGAATAATATTTGTGGTGATAATCAAGATAACATGTTGATCACCAGTGACTTTGCGTCTGCTCCGGTATGCTACGACTATGGTGGTCTGATTGATGAAGAATATATTTTTGACGTCAATGAATTGTTGGCAACAGTAGAGCCACAACCATTGTCATTGGAGTTGCCTCAGATGGCTGAAACCCTAGAGCCTTTGCTAAGTTCTGATAGGACAGTGGATGCTTGGAACTCAAGTGGTTTGGAGAATATATATGCAACCAACAAAAAGACATCACATATTGGTTCAACAGTTGAAAAATATTTTGGAAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

328

Amino Acids

37.36

Weight (kDa)

5.18

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AatII GACGTC 1 cut(s) 786
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 565, 575
AcsI RAATTY 3 cut(s) 238, 358, 976
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 4 cut(s) 119, 289, 368, 613
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 5 cut(s) 142, 504, 517, 954, 962
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 1 cut(s) 954
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 2 cut(s) 234, 390
Alw26I GTCTC 2 cut(s) 320, 431
AlwI GGATC 2 cut(s) 565, 575
AoxI GGCC 2 cut(s) 279, 604
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 3 cut(s) 238, 358, 976
AseI ATTAAT 1 cut(s) 107
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 4 cut(s) 35, 552, 698, 703
AsuII TTCGAA 1 cut(s) 671
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 165, 234
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 234, 390
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 835
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 3 cut(s) 430, 631, 708
BcoDI GTCTC 2 cut(s) 320, 431
BfaI CTAG 1 cut(s) 854
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 270, 877
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu14I TTCGAA 1 cut(s) 671
BpuEI CTTGAG 3 cut(s) 218, 492, 883
BsaBI GATNNNNATC 1 cut(s) 556
BsaHI GRCGYC 1 cut(s) 783
BsaJI CCNNGG 4 cut(s) 164, 165, 391, 563
BsaWI WCCGGW 1 cut(s) 733
Bse1I ACTGG 2 cut(s) 337, 714
Bse8I GATNNNNATC 1 cut(s) 556
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 164, 165, 391, 563
BseGI GGATG 2 cut(s) 586, 892
BseJI GATNNNNATC 1 cut(s) 556
BseMII CTCAG 1 cut(s) 851
BseNI ACTGG 2 cut(s) 337, 714
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 281, 606
BsiHKAI GWGCWC 2 cut(s) 234, 390
BsiSI CCGG 2 cut(s) 282, 734
BsmAI GTCTC 2 cut(s) 320, 431
BsmBI CGTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 281, 606
Bsp119I TTCGAA 1 cut(s) 671
Bsp1286I GDGCHC 3 cut(s) 165, 234, 390
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 6 cut(s) 52, 430, 557, 567, 631, 708
BspACI CCGC 1 cut(s) 364
BspANI GGCC 2 cut(s) 281, 606
BspCNI CTCAG 1 cut(s) 850
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 588
BspPI GGATC 2 cut(s) 565, 575
BspT104I TTCGAA 1 cut(s) 671
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 2 cut(s) 337, 714
BssECI CCNNGG 4 cut(s) 164, 165, 391, 563
BssMI GATC 6 cut(s) 52, 430, 557, 567, 631, 708
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 4 cut(s) 616, 805, 883, 958
BstACI GRCGYC 1 cut(s) 783
BstAUI TGTACA 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 671
BstDEI CTNAG 3 cut(s) 608, 837, 866
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 586, 892
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 6 cut(s) 55, 433, 560, 570, 634, 711
BstMAI GTCTC 2 cut(s) 320, 431
BstMBI GATC 6 cut(s) 52, 430, 557, 567, 631, 708
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 281, 606
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 586, 892
BtsIMutI CAGTG 2 cut(s) 721, 888
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 714
Csp6I GTAC 4 cut(s) 118, 288, 367, 612
CspCI CAANNNNNGTGG 2 cut(s) 801, 836
CviAII CATG 2 cut(s) 134, 703
CviQI GTAC 4 cut(s) 118, 288, 367, 612
DdeI CTNAG 3 cut(s) 608, 837, 866
DpnI GATC 6 cut(s) 54, 432, 559, 569, 633, 710
DpnII GATC 6 cut(s) 52, 430, 557, 567, 631, 708
DriI GACNNNNNGTC 1 cut(s) 724
Eam1105I GACNNNNNGTC 1 cut(s) 724
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 165, 234
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 563
EcoT38I GRGCYC 2 cut(s) 165, 234
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 2 cut(s) 137, 706
FatI CATG 2 cut(s) 133, 702
FbaI TGATCA 3 cut(s) 430, 631, 708
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 593, 899
FriOI GRGCYC 2 cut(s) 165, 234
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 854
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 281, 606
HapII CCGG 2 cut(s) 282, 734
HgaI GACGC 1 cut(s) 714
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 2 cut(s) 137, 706
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HpaII CCGG 2 cut(s) 282, 734
HphI GGTGA 4 cut(s) 35, 552, 698, 703
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 5 cut(s) 188, 229, 759, 840, 874
Hpy188III TCNNGA 8 cut(s) 56, 235, 434, 509, 571, 629, 635, 695
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 4 cut(s) 313, 371, 511, 532
HpyCH4III ACNGT 4 cut(s) 616, 805, 883, 958
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 2 cut(s) 133, 923
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 3 cut(s) 608, 837, 866
HpySE526I ACGT 1 cut(s) 783
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 2 cut(s) 137, 706
HspAI GCGC 1 cut(s) 259
Ksp22I TGATCA 3 cut(s) 430, 631, 708
Kzo9I GATC 6 cut(s) 52, 430, 557, 567, 631, 708
LmnI GCTCC 3 cut(s) 229, 294, 736
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 270, 877
MaeI CTAG 1 cut(s) 854
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 2 cut(s) 68, 716
MalI GATC 6 cut(s) 54, 432, 559, 569, 633, 710
MboI GATC 6 cut(s) 52, 430, 557, 567, 631, 708
MboII GAAGA 5 cut(s) 175, 214, 221, 422, 779
MhlI GDGCHC 3 cut(s) 165, 234, 390
MluCI AATT 8 cut(s) 7, 238, 358, 499, 512, 655, 791, 976
MnlI CCTC 9 cut(s) 86, 182, 209, 271, 278, 538, 571, 577, 846
MseI TTAA 3 cut(s) 107, 242, 465
MspI CCGG 2 cut(s) 282, 734
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 6 cut(s) 52, 430, 557, 567, 631, 708
NlaIII CATG 2 cut(s) 137, 706
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 671
PasI CCCWGGG 1 cut(s) 165
PciI ACATGT 1 cut(s) 702
PkrI GCNGC 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 702
PshBI ATTAAT 1 cut(s) 107
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
RsaI GTAC 4 cut(s) 119, 289, 368, 613
RsaNI GTAC 4 cut(s) 118, 288, 367, 612
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 107, 242, 465
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 6 cut(s) 52, 430, 557, 567, 631, 708
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 3 cut(s) 165, 234, 390
SetI ASST 7 cut(s) 41, 196, 201, 234, 289, 318, 786
SfaNI GCATC 2 cut(s) 270, 877
SfuI TTCGAA 1 cut(s) 671
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 3 cut(s) 233, 507, 898
SmoI CTYRAG 3 cut(s) 233, 507, 898
Sse9I AATT 8 cut(s) 7, 238, 358, 499, 512, 655, 791, 976
SsiI CCGC 1 cut(s) 364
SspI AATATT 2 cut(s) 679, 968
SspMI CTAG 1 cut(s) 854
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 4 cut(s) 616, 805, 883, 958
TaiI ACGT 1 cut(s) 786
TaqI TCGA 2 cut(s) 648, 671
TasI AATT 8 cut(s) 7, 238, 358, 499, 512, 655, 791, 976
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 3 cut(s) 107, 242, 465
Tru9I TTAA 3 cut(s) 107, 242, 465
TscAI CASTG 2 cut(s) 721, 888
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 2 cut(s) 780, 804
TspRI CASTG 2 cut(s) 721, 888
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 3 cut(s) 238, 358, 976
XceI RCATGY 1 cut(s) 706
XspI CTAG 1 cut(s) 854
ZraI GACGTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.