RLG00000001256
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000371
Physical Location & Seq
Forward (+)
12983349 .. 12984500
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001256

Sequence Viewer

Length: 882 bp
ATGGATTGTTGCTTTCCGGCGGGTGTGAGATTCCACCCGACTGATGAAGAACTGATTGGGCACTACTCCACCTCAAGAATAATCCTAACTCGGCGACACCGTCCTTGGTACTTCCTGAGTTTGATTTGTACGAAGGCCAATCCCCGTGGCGGCCACGTTAGTACCCGGCATAGTCGAAGGGTTGGATCATCGGGCACATGGAGCCAAGGCGAACCCTCCAAACCTGTTTTTGGCTACAAGAACCAGGAAACCCTAATTGGGCGAAAGACGAAATTGAGGTATGAGAACAAACTGGTGCCGGAACAACACGGTTATTGGATTATAGAGGAGTATAGCACTGTTGATAATCACTCCAGTTCTTCTACTGCTCATGATGATTATGTGATTTGCCGACTCCGACAGAACAACACCAACAGATCATCATCATCATCATCTGGACAGAGGGGAGCAATAAGATATAATAATGATAATAAGAGGAAGTCTCAAGATGATGATGATCACCATCCAAAGCATAGGAAAAAGCCCAAGTCTTTGACAGTTCCTGATCCACAACCTGCTATTACATCCACAGAAGAAACATATACAGTACCACCTTTACCTCACATTGGTTCAGAATGGCAACAACCAATAGATCAAAATCAGTTGGTTATTAGTGAGGCACAAGTCAGCAGCGAAGATGAAGCATTTAGTTTTGCCTTTGATGATATCATTATTGCTATGGATCATGCGTACATCAACTCTGATGAATTTAGCATCTACAACTTTGGAGACGAGTTCAAGTCGGGATGGGATGACATTGGTACAGCTGATCTACTACCACTCTCATCATCATTCCCGCAGTTGCTTGAAGACTGGAATCATGCAGTACGTATAGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

294

Amino Acids

33.37

Weight (kDa)

6.05

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 33 - 112 4.6e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 3 cut(s) 20, 150, 836
AclWI GGATC 3 cut(s) 193, 539, 729
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 746
AfaI GTAC 7 cut(s) 110, 130, 163, 588, 731, 802, 867
AfiI CCNNNNNNNGG 4 cut(s) 149, 230, 258, 605
AgsI TTSAA 2 cut(s) 778, 848
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 39, 71, 240, 272
AluBI AGCT 2 cut(s) 806, 875
AluI AGCT 2 cut(s) 806, 875
Alw26I GTCTC 2 cut(s) 486, 762
AlwI GGATC 3 cut(s) 193, 539, 729
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 2 cut(s) 135, 151
ApeKI GCWGC 2 cut(s) 669, 875
ApoI RAATTY 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 491
BaeGI GKGCMC 2 cut(s) 63, 197
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BanI GGYRCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 681, 862
BccI CCATC 2 cut(s) 510, 780
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 486, 762
BfaI CTAG 1 cut(s) 880
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 151, 670, 876
BlsI GCNGC 3 cut(s) 152, 671, 877
Bme1390I CCNGG 2 cut(s) 166, 245
BmiI GGNNCC 2 cut(s) 203, 297
BmrFI CCNGG 2 cut(s) 166, 245
BmsI GCATC 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 855
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BpmI CTGGAG 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 58, 468
BpuMI CCSGG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 869
BsaBI GATNNNNATC 4 cut(s) 421, 495, 501, 636
BsaJI CCNNGG 3 cut(s) 104, 145, 205
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 230, 258, 605
Bse1I ACTGG 3 cut(s) 297, 354, 857
Bse8I GATNNNNATC 4 cut(s) 421, 495, 501, 636
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 104, 145, 205
BseGI GGATG 4 cut(s) 502, 563, 791, 796
BseJI GATNNNNATC 4 cut(s) 421, 495, 501, 636
BseLI CCNNNNNNNGG 4 cut(s) 149, 230, 258, 605
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 3 cut(s) 297, 354, 857
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 2 cut(s) 63, 197
BseXI GCAGC 2 cut(s) 681, 862
BshFI GGCC 2 cut(s) 137, 153
BshNI GGYRCC 1 cut(s) 295
BsiSI CCGG 3 cut(s) 17, 166, 299
BslI CCNNNNNNNGG 4 cut(s) 149, 230, 258, 605
BsmAI GTCTC 2 cut(s) 486, 762
BsmBI CGTCTC 1 cut(s) 762
BsnI GGCC 2 cut(s) 137, 153
Bsp1286I GDGCHC 2 cut(s) 63, 197
Bsp143I GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
BspACI CCGC 3 cut(s) 20, 150, 836
BspANI GGCC 2 cut(s) 137, 153
BspCNI CTCAG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 203, 297
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 3 cut(s) 193, 539, 729
BspT107I GGYRCC 1 cut(s) 295
BsrI ACTGG 3 cut(s) 297, 354, 857
BssECI CCNNGG 3 cut(s) 104, 145, 205
BssMI GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
BssT1I CCWWGG 2 cut(s) 104, 205
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 5 cut(s) 101, 311, 340, 538, 586
BstBAI YACGTR 1 cut(s) 869
BstDEI CTNAG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 502, 563, 791, 796
BstKTI GATC 7 cut(s) 188, 419, 499, 547, 634, 724, 811
BstMAI GTCTC 2 cut(s) 486, 762
BstMBI GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 164, 243
BstSLI GKGCMC 2 cut(s) 63, 197
BstSNI TACGTA 1 cut(s) 869
BstV1I GCAGC 2 cut(s) 681, 862
BstV2I GAAGAC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 137, 153
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 4 cut(s) 502, 563, 791, 796
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 562
CaiI CAGNNNCTG 1 cut(s) 542
CciI TCATGA 1 cut(s) 370
Csp6I GTAC 7 cut(s) 109, 129, 162, 587, 730, 801, 866
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 4 cut(s) 198, 371, 725, 860
CviJI RGCY 7 cut(s) 137, 153, 204, 234, 523, 806, 875
CviKI_1 RGCY 7 cut(s) 137, 153, 204, 234, 523, 806, 875
CviQI GTAC 7 cut(s) 109, 129, 162, 587, 730, 801, 866
DdeI CTNAG 1 cut(s) 116
DpnI GATC 7 cut(s) 187, 418, 498, 546, 633, 723, 810
DpnII GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
EaeI YGGCCR 1 cut(s) 151
Eco105I TACGTA 1 cut(s) 869
Eco130I CCWWGG 2 cut(s) 104, 205
Eco32I GATATC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 104, 205
ErhI CCWWGG 2 cut(s) 104, 205
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 4 cut(s) 201, 374, 728, 863
FatI CATG 4 cut(s) 197, 370, 724, 859
FauI CCCGC 2 cut(s) 13, 843
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 3 cut(s) 151, 670, 876
FokI GGATG 4 cut(s) 489, 550, 798, 803
Fsp4HI GCNGC 3 cut(s) 151, 670, 876
FspBI CTAG 1 cut(s) 880
GluI GCNGC 3 cut(s) 151, 670, 876
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 2 cut(s) 137, 153
HapII CCGG 3 cut(s) 17, 166, 299
Hin1II CATG 4 cut(s) 201, 374, 728, 863
HinfI GANTC 3 cut(s) 30, 393, 856
HpaII CCGG 3 cut(s) 17, 166, 299
HphI GGTGA 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 398, 613, 742
Hpy188III TCNNGA 7 cut(s) 75, 115, 371, 435, 485, 542, 783
HpyAV CCTTC 2 cut(s) 127, 171
HpyCH4III ACNGT 5 cut(s) 101, 311, 340, 538, 586
HpyCH4IV ACGT 2 cut(s) 156, 868
HpyCH4V TGCA 1 cut(s) 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 2 cut(s) 156, 868
Hsp92II CATG 4 cut(s) 201, 374, 728, 863
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
LmnI GCTCC 2 cut(s) 201, 446
Lsp1109I GCAGC 2 cut(s) 681, 862
LweI GCATC 1 cut(s) 762
MaeI CTAG 1 cut(s) 880
MaeII ACGT 2 cut(s) 156, 868
MalI GATC 7 cut(s) 187, 418, 498, 546, 633, 723, 810
MboI GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
MboII GAAGA 5 cut(s) 59, 351, 584, 686, 860
MhlI GDGCHC 2 cut(s) 63, 197
MluCI AATT 3 cut(s) 255, 272, 746
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 163, 421
MnlI CCTC 8 cut(s) 82, 226, 270, 319, 435, 468, 609, 649
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 3 cut(s) 17, 166, 299
MspR9I CCNGG 2 cut(s) 166, 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 166
NdeII GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
NlaIII CATG 4 cut(s) 201, 374, 728, 863
NlaIV GGNNCC 2 cut(s) 203, 297
NmeAIII GCCGAG 1 cut(s) 70
PagI TCATGA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PfeI GAWTC 2 cut(s) 30, 856
PflFI GACNNNGTC 1 cut(s) 99
PkrI GCNGC 3 cut(s) 152, 671, 877
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 203, 297
PstNI CAGNNNCTG 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 7 cut(s) 110, 130, 163, 588, 731, 802, 867
RsaNI GTAC 7 cut(s) 109, 129, 162, 587, 730, 801, 866
SatI GCNGC 3 cut(s) 151, 670, 876
Sau3AI GATC 7 cut(s) 185, 416, 496, 544, 631, 721, 808
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 2 cut(s) 166, 245
SduI GDGCHC 2 cut(s) 63, 197
SfaNI GCATC 1 cut(s) 762
SmlI CTYRAG 2 cut(s) 73, 483
SmoI CTYRAG 2 cut(s) 73, 483
SnaBI TACGTA 1 cut(s) 869
Sse9I AATT 3 cut(s) 255, 272, 746
SsiI CCGC 3 cut(s) 20, 150, 836
SspMI CTAG 1 cut(s) 880
StyD4I CCNGG 2 cut(s) 164, 243
StyI CCWWGG 2 cut(s) 104, 205
TaaI ACNGT 5 cut(s) 101, 311, 340, 538, 586
TaiI ACGT 2 cut(s) 159, 871
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 255, 272, 746
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 30, 856
TscAI CASTG 1 cut(s) 343
TseI GCWGC 2 cut(s) 669, 875
TspDTI ATGAA 3 cut(s) 60, 693, 759
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 99
XapI RAATTY 1 cut(s) 746
XspI CTAG 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.