Rroxscaffold_4G00294800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000371
Physical Location & Seq
Forward (+)
14775280 .. 14776610
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294800.1

Sequence Viewer

Length: 186 bp
ATGAGCAGAGACAAAACGAAGCCGCTTTCAGTGCCGTTAGGCTACAGGTTCCACCGCACCGAAGAGGAGCTTCTGACTCACTATTTCAAGAAGAAAATTCATGGTGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATAGACATCTGCAAATACGAGCCGGCTGAGCTTCCTGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

61

Amino Acids

7.11

Weight (kDa)

6.26

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 59 5.7e-11 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 55
AcsI RAATTY 1 cut(s) 96
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 70, 172
AluI AGCT 2 cut(s) 70, 172
Alw26I GTCTC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 1 cut(s) 23
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 163
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 2 cut(s) 23, 55
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 31, 169
BstSFI CTRYAG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 163
CviAII CATG 1 cut(s) 101
CviJI RGCY 6 cut(s) 22, 42, 70, 163, 167, 172
CviKI_1 RGCY 6 cut(s) 22, 42, 70, 163, 167, 172
DdeI CTNAG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
FaeI CATG 1 cut(s) 104
FaiI YATR 1 cut(s) 102
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
HapII CCGG 1 cut(s) 164
Hin1II CATG 1 cut(s) 104
HinfI GANTC 2 cut(s) 76, 113
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 75, 118
Hpy188III TCNNGA 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 169
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 104
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 31, 150, 177
MboII GAAGA 2 cut(s) 74, 103
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 58
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 112
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 31, 169
NaeI GCCGGC 1 cut(s) 165
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 50
SatI GCNGC 1 cut(s) 23
SchI GAGTC 1 cut(s) 70
SetI ASST 3 cut(s) 50, 72, 174
SfcI CTRYAG 1 cut(s) 43
SgeI CNNG 6 cut(s) 58, 100, 113, 149, 172, 176
Sse9I AATT 1 cut(s) 96
SsiI CCGC 2 cut(s) 23, 55
TasI AATT 1 cut(s) 96
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 1 cut(s) 36
XapI RAATTY 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.