FvH4_5g34902
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000371
Physical Location & Seq
Reverse (-)
25550245 .. 25551300
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34902.t1

Sequence Viewer

Length: 918 bp
ATGGATCCAACGGGTTTCAGATTCCATCCGACTGATCAAGAGCTGATCGGGCACTACCTTTTCATCAAAAACAACTCTGATCCGGTGCTGGAGACGGGATCATATTTGCGGGAGTTTGACATGTACGGCGAGCCCTTCAAATCTGTTTATGCCAAAAACAACCAAGAAACCCCAATTGGGAAAAAGACCAAGTTGAGGTATGAGAACAAAAACGTGACGGAGCAAAGTGGTTGTTGGTTCATGGATGAGTACAGTACTGTTGATTATGATGGTGATTATGTGATTTGCCGACTTCGAGAGAACCCCGACAAGAGACCATCACCACCACCGTTATCAAAACCTAGTGATAAGAAGAGGAAGTGTCAAGCTGATCCAAAGCCTAGCAAAAAGACCAAGTCTTTGAGAGTTTCTGATCCACAGCCTGCAACTATAACCAATGAGGCTAGAAAGACAGTGTCTTTGAACCAGAGGCCTAATCCGGAGAAGCGATTTGATCAGTCTTTGAGACTTCCTGATTCACACGTTATGTTGCTAGAGGGTACTACTGCTGCTGGTCACATTGATTGTGCATTCGACACTGTGGAAATGTTCCATCATGATCAGGAATATGAGACTCAACATTTTCTGTTAGAGGGTAATACTGCTGGTCACAGTGATTATGCATTAGTGGAAGTACAAAGGGATGCATTTTCCCCTGCTGCTGTTTCAGAACAACAACACACATGTGCATCATCATTCGCACTACCCAATCTTACTGATGATGTGTTTGTGTCTGAAAATGAGAGTGGAAATCAGCAGTTAGAGGATACCGATTGCCTTGGTGTTGCATTGGGGGTTGTAGAAGGGGATACATTATTTCCTGCCCTCTCAGAACAACAAACATCATCATTAATGTCACAGATGCAGGATATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

306

Amino Acids

34.38

Weight (kDa)

4.93

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 1 cut(s) 109
AclWI GGATC 5 cut(s) 12, 74, 106, 365, 407
AfaI GTAC 5 cut(s) 125, 251, 256, 541, 675
AfiI CCNNNNNNNGG 2 cut(s) 177, 195
AflIII ACRYGT 3 cut(s) 120, 520, 722
AgsI TTSAA 2 cut(s) 139, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AleI CACNNNNGTG 1 cut(s) 723
AluBI AGCT 2 cut(s) 43, 368
AluI AGCT 2 cut(s) 43, 368
Alw26I GTCTC 4 cut(s) 86, 307, 499, 605
AlwI GGATC 5 cut(s) 12, 74, 106, 365, 407
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 548, 698
ArsI GACNNNNNNTTYG 4 cut(s) 382, 414, 442, 474
AseI ATTAAT 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 284, 312
BaeGI GKGCMC 1 cut(s) 54
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 535, 685
BccI CCATC 4 cut(s) 33, 263, 325, 600
BceAI ACGGC 1 cut(s) 142
BciVI GTATCC 2 cut(s) 799, 841
BclI TGATCA 3 cut(s) 34, 493, 598
BcoDI GTCTC 4 cut(s) 86, 307, 499, 605
BfaI CTAG 4 cut(s) 342, 381, 444, 533
BfuI GTATCC 2 cut(s) 799, 841
BisI GCNGC 2 cut(s) 549, 699
BlsI GCNGC 2 cut(s) 550, 700
BmcAI AGTACT 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 673, 737, 891
BpmI CTGGAG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 817
BsaWI WCCGGW 2 cut(s) 82, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 195
BseAI TCCGGA 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 817
BseGI GGATG 3 cut(s) 25, 250, 688
BseLI CCNNNNNNNGG 2 cut(s) 177, 195
BseMII CTCAG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 535, 685
BshFI GGCC 1 cut(s) 472
BsiSI CCGG 2 cut(s) 83, 479
BslI CCNNNNNNNGG 2 cut(s) 177, 195
BsmAI GTCTC 4 cut(s) 86, 307, 499, 605
BsmBI CGTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 1 cut(s) 472
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 54, 135
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
BspACI CCGC 1 cut(s) 109
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 478
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 5 cut(s) 12, 74, 106, 365, 407
BspTNI GGTCTC 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 817
BssMI GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
BssT1I CCWWGG 1 cut(s) 817
Bst4CI ACNGT 6 cut(s) 254, 259, 330, 454, 580, 653
Bst6I CTCTTC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 131, 423
BstDEI CTNAG 1 cut(s) 868
BstF5I GGATG 3 cut(s) 25, 250, 688
BstKTI GATC 9 cut(s) 7, 37, 48, 82, 101, 373, 415, 496, 601
BstMAI GTCTC 4 cut(s) 86, 307, 499, 605
BstMBI GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 2 cut(s) 124, 726
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 535, 685
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 2 cut(s) 799, 841
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 3 cut(s) 25, 250, 688
BtsIMutI CAGTG 3 cut(s) 459, 576, 658
Cac8I GCNNGC 2 cut(s) 131, 423
CciI TCATGA 1 cut(s) 595
Csp6I GTAC 5 cut(s) 124, 250, 255, 540, 674
CviAII CATG 4 cut(s) 121, 241, 596, 723
CviJI RGCY 7 cut(s) 43, 133, 368, 379, 421, 443, 472
CviKI_1 RGCY 7 cut(s) 43, 133, 368, 379, 421, 443, 472
CviQI GTAC 5 cut(s) 124, 250, 255, 540, 674
DdeI CTNAG 1 cut(s) 868
DpnI GATC 9 cut(s) 6, 36, 47, 81, 100, 372, 414, 495, 600
DpnII GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 817
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 817
EcoT22I ATGCAT 2 cut(s) 664, 688
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 817
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 4 cut(s) 124, 244, 599, 726
FatI CATG 4 cut(s) 120, 240, 595, 722
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 3 cut(s) 34, 493, 598
Fnu4HI GCNGC 2 cut(s) 549, 699
FokI GGATG 3 cut(s) 12, 257, 695
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 549, 699
FspBI CTAG 4 cut(s) 342, 381, 444, 533
GluI GCNGC 2 cut(s) 549, 699
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 472
HapII CCGG 2 cut(s) 83, 479
Hin1II CATG 4 cut(s) 124, 244, 599, 726
HinfI GANTC 3 cut(s) 21, 515, 613
HpaII CCGG 2 cut(s) 83, 479
HphI GGTGA 2 cut(s) 284, 312
Hpy188I TCNGA 7 cut(s) 20, 30, 79, 412, 709, 775, 871
Hpy188III TCNNGA 6 cut(s) 38, 296, 479, 512, 596, 602
HpyAV CCTTC 2 cut(s) 145, 836
HpyCH4III ACNGT 6 cut(s) 254, 259, 330, 454, 580, 653
HpyCH4IV ACGT 2 cut(s) 213, 522
HpyCH4V TGCA 7 cut(s) 425, 569, 662, 686, 728, 827, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 868
HpySE526I ACGT 2 cut(s) 213, 522
Hsp92II CATG 4 cut(s) 124, 244, 599, 726
Kpn2I TCCGGA 1 cut(s) 478
Ksp22I TGATCA 3 cut(s) 34, 493, 598
Kzo9I GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 2 cut(s) 535, 685
LweI GCATC 3 cut(s) 673, 737, 891
MaeI CTAG 4 cut(s) 342, 381, 444, 533
MaeII ACGT 2 cut(s) 213, 522
MaeIII GTNAC 4 cut(s) 214, 554, 647, 894
MalI GATC 9 cut(s) 6, 36, 47, 81, 100, 372, 414, 495, 600
MboI GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
MboII GAAGA 1 cut(s) 364
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 54, 135
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 2 cut(s) 32, 53
MnlI CCTC 8 cut(s) 189, 348, 433, 462, 529, 625, 796, 875
Mph1103I ATGCAT 2 cut(s) 664, 688
MroI TCCGGA 1 cut(s) 478
MseI TTAA 1 cut(s) 890
MslI CAYNNNNRTG 1 cut(s) 723
MspI CCGG 2 cut(s) 83, 479
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 569
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
NlaIII CATG 4 cut(s) 124, 244, 599, 726
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 4 cut(s) 214, 554, 647, 894
NsiI ATGCAT 2 cut(s) 664, 688
NspI RCATGY 2 cut(s) 124, 726
OliI CACNNNNGTG 1 cut(s) 723
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 1 cut(s) 472
PciI ACATGT 2 cut(s) 120, 722
PctI GAATGC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 21, 515
PflFI GACNNNGTC 2 cut(s) 394, 454
PkrI GCNGC 2 cut(s) 550, 700
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PscI ACATGT 2 cut(s) 120, 722
PshBI ATTAAT 1 cut(s) 890
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 2 cut(s) 394, 454
RsaI GTAC 5 cut(s) 125, 251, 256, 541, 675
RsaNI GTAC 5 cut(s) 124, 250, 255, 540, 674
RseI CAYNNNNRTG 1 cut(s) 723
SaqAI TTAA 1 cut(s) 890
SatI GCNGC 2 cut(s) 549, 699
Sau3AI GATC 9 cut(s) 4, 34, 45, 79, 98, 370, 412, 493, 598
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 1 cut(s) 607
SduI GDGCHC 2 cut(s) 54, 135
SetI ASST 7 cut(s) 45, 60, 200, 216, 343, 370, 525
SfaNI GCATC 3 cut(s) 673, 737, 891
SmiMI CAYNNNNRTG 1 cut(s) 723
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 1 cut(s) 109
SspMI CTAG 4 cut(s) 342, 381, 444, 533
StuI AGGCCT 1 cut(s) 472
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 6 cut(s) 254, 259, 330, 454, 580, 653
TaiI ACGT 2 cut(s) 216, 525
TaqI TCGA 2 cut(s) 295, 573
TasI AATT 1 cut(s) 174
TatI WGTACW 3 cut(s) 249, 254, 673
TfiI GAWTC 2 cut(s) 21, 515
Tru1I TTAA 1 cut(s) 890
Tru9I TTAA 1 cut(s) 890
TscAI CASTG 3 cut(s) 459, 583, 658
TseFI GTSAC 4 cut(s) 214, 554, 647, 894
TseI GCWGC 2 cut(s) 548, 698
Tsp45I GTSAC 4 cut(s) 214, 554, 647, 894
TspDTI ATGAA 2 cut(s) 52, 229
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 459, 583, 658
Tth111I GACNNNGTC 2 cut(s) 394, 454
VspI ATTAAT 1 cut(s) 890
XceI RCATGY 2 cut(s) 124, 726
XspI CTAG 4 cut(s) 342, 381, 444, 533
ZrmI AGTACT 1 cut(s) 256
Zsp2I ATGCAT 2 cut(s) 664, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.