RLG00000022153
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
81384547 .. 81385936
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022153

Sequence Viewer

Length: 1191 bp
ATGTCAACTGTAATGCCAACGGGTTTCAGGTTCCATCCGAAGGATCACGAGTTGGTGAGCTATTACCTGTATAGCAAGGTGAATGGGGAAGAGTCGGTAATTCCACCACCATCCTATAGGATGCCAGAGTTAAACCTCAATGGTAAGCGGATTGATCGCAGGACAAACTCAAGATTGGGAACACGGAGCGAGGGAGAAAGATCTAAACGGGTTGATGATGAGAACGGAAACCCCATTGGGACAAAGAGGAAATTCCGGTATGAGAATGAGTATTCTTTGCACCATGCTACTTGGCAAATGGAAGAGTACAGCAGCAATTTTTCTCCCTATTGGGTGATTTGTCGTCTCAAAAAGAAAAAGCGCTCATCCGAATTAAAGAAGAGAGAGGACATGTTATGCGCAGATGATCCATCAAGATCGACAGGGATGAAGTGCATCAAGCCGAGGAACAAGAGGTTAAGAAGAGTGGATCATCAAGAAGTGATGGAAAATACTTTGATGAATATGCCCAGCAATAACAAAGATCATCCATCAACATCAACAGAGGTGAATATGCCCAGCAACAACTACTACTTTGAGGAGGATTTACCACAAAGTTCAACTAAAAGTAGTACTAACGCTAACGACCAGCAATTCAATATTAGTGAAAACTTGGATTTCGTTGCGGATCATGTTCATACTAATCTCATGCCAATCAATAATGTGAAGGGGATCGATCATTTGAGTATGCCCGACAACAACTACCACTTTGAGAATGGTATACAGCAAAGTTCAACTACTACCAGTAGTACTAATAACGACGATCAGCAATGCAGTATTAGTGAAAACTTGCATTTCGCTGCGGATCTTGGTAATCTCATGCCAAACAGTGGTGTCAAGGTGGTTGATCCTATGTATACCCCCAGCAACAACTACCACTACTATGAGATGGACTTACAGCAAAGTTCAACTACTAGCAGTAGTAGTCATGATCATGTCAATGATGCAAAAGGGGTCGATACTTACTACTGGGACAATCTATTGAACTTGTTACTTGCGGAGGAAGACAGTGGCTGTTATGGGAATGGTAGTTTGGCTCCACAGCCTGAGTTAAACGTCGTAGGGTTGCGAACAAGAGAGAGAGACCACGATGTACCAGCTGGTTGTGGTCTTTGGGTTCCATATTTCTTTCCTTTCTTGTTGCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

45.49

Weight (kDa)

5.81

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 869
AccI GTMKAC 2 cut(s) 760, 896
AciI CCGC 4 cut(s) 148, 665, 842, 1037
AclWI GGATC 7 cut(s) 51, 401, 477, 675, 719, 852, 881
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 4 cut(s) 308, 613, 790, 1134
AfeI AGCGCT 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 40, 869
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 5 cut(s) 600, 637, 774, 948, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AluBI AGCT 2 cut(s) 60, 1139
AluI AGCT 2 cut(s) 60, 1139
Alw26I GTCTC 2 cut(s) 350, 1116
AlwI GGATC 7 cut(s) 51, 401, 477, 675, 719, 852, 881
AlwNI CAGNNNCTG 1 cut(s) 1053
Aor51HI AGCGCT 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 312, 839
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 2 cut(s) 363, 401
AsuHPI GGTGA 4 cut(s) 67, 91, 346, 559
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 1050
BbvI GCAGC 2 cut(s) 324, 826
BccI CCATC 6 cut(s) 42, 118, 418, 478, 538, 922
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 2 cut(s) 350, 1116
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 1 cut(s) 115
BfoI RGCGCY 1 cut(s) 364
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 313, 840
BlsI GCNGC 2 cut(s) 314, 841
BmcAI AGTACT 2 cut(s) 613, 790
BmiI GGNNCC 3 cut(s) 32, 1077, 1158
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 3 cut(s) 111, 444, 973
BmuI ACTGGG 1 cut(s) 1018
BpiI GAAGAC 1 cut(s) 1050
BpuEI CTTGAG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 714
BsaI GGTCTC 1 cut(s) 1116
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 869
Bse1I ACTGG 2 cut(s) 783, 1013
Bse3DI GCAATG 1 cut(s) 815
BseCI ATCGAT 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 6 cut(s) 34, 110, 126, 365, 432, 526
BseLI CCNNNNNNNGG 2 cut(s) 40, 869
BseMI GCAATG 1 cut(s) 815
BseMII CTCAG 1 cut(s) 1077
BseNI ACTGG 2 cut(s) 783, 1013
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 2 cut(s) 324, 826
BseYI CCCAGC 3 cut(s) 509, 557, 902
BshVI ATCGAT 1 cut(s) 714
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 2 cut(s) 253, 1025
BslI CCNNNNNNNGG 2 cut(s) 40, 869
BsmAI GTCTC 2 cut(s) 350, 1116
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 253, 1025
Bso31I GGTCTC 1 cut(s) 1116
BspACI CCGC 4 cut(s) 148, 665, 842, 1037
BspCNI CTCAG 1 cut(s) 1078
BspDI ATCGAT 1 cut(s) 714
BspHI TCATGA 1 cut(s) 967
BspLI GGNNCC 3 cut(s) 32, 1077, 1158
BspPI GGATC 7 cut(s) 51, 401, 477, 675, 719, 852, 881
BspTNI GGTCTC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 815
BsrI ACTGG 2 cut(s) 783, 1013
BssECI CCNNGG 1 cut(s) 443
BssNAI GTATAC 2 cut(s) 761, 897
BssSI CACGAG 1 cut(s) 47
Bst1107I GTATAC 2 cut(s) 761, 897
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 10, 869, 1049
Bst6I CTCTTC 4 cut(s) 84, 297, 374, 457
BstDEI CTNAG 1 cut(s) 1086
BstF5I GGATG 6 cut(s) 34, 110, 126, 365, 432, 526
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 2 cut(s) 363, 401
BstMAI GTCTC 2 cut(s) 350, 1116
BstNSI RCATGY 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 324, 826
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 2 cut(s) 200, 844
BstYI RGATCY 2 cut(s) 200, 844
BstZ17I GTATAC 2 cut(s) 761, 897
Bsu15I ATCGAT 1 cut(s) 714
BsuTUI ATCGAT 1 cut(s) 714
BtsCI GGATG 6 cut(s) 34, 110, 126, 365, 432, 526
BtsIMutI CAGTG 2 cut(s) 874, 1054
CaiI CAGNNNCTG 1 cut(s) 1053
CciI TCATGA 1 cut(s) 967
CfoI GCGC 2 cut(s) 363, 401
ClaI ATCGAT 1 cut(s) 714
Csp6I GTAC 4 cut(s) 307, 612, 789, 1133
CviAII CATG 7 cut(s) 284, 391, 671, 688, 859, 968, 974
CviJI RGCY 6 cut(s) 60, 442, 1053, 1076, 1084, 1139
CviKI_1 RGCY 6 cut(s) 60, 442, 1053, 1076, 1084, 1139
CviQI GTAC 4 cut(s) 307, 612, 789, 1133
DdeI CTNAG 1 cut(s) 1086
Eam1104I CTCTTC 4 cut(s) 84, 297, 374, 457
EarI CTCTTC 4 cut(s) 84, 297, 374, 457
Eco31I GGTCTC 1 cut(s) 1116
Eco47III AGCGCT 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 7 cut(s) 287, 394, 674, 691, 862, 971, 977
FaqI GGGAC 2 cut(s) 253, 1025
FatI CATG 7 cut(s) 283, 390, 670, 687, 858, 967, 973
FauNDI CATATG 1 cut(s) 1185
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 2 cut(s) 760, 896
Fnu4HI GCNGC 2 cut(s) 313, 840
FokI GGATG 6 cut(s) 21, 97, 133, 352, 439, 513
Fsp4HI GCNGC 2 cut(s) 313, 840
FspBI CTAG 1 cut(s) 954
FspI TGCGCA 1 cut(s) 400
GlaI GCGC 2 cut(s) 362, 400
GluI GCNGC 2 cut(s) 313, 840
GsaI CCCAGC 3 cut(s) 513, 561, 906
HaeII RGCGCY 1 cut(s) 364
HapII CCGG 1 cut(s) 256
HhaI GCGC 2 cut(s) 363, 401
Hin1II CATG 7 cut(s) 287, 394, 674, 691, 862, 971, 977
Hin6I GCGC 2 cut(s) 361, 399
HinP1I GCGC 2 cut(s) 361, 399
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 256
HphI GGTGA 4 cut(s) 67, 91, 346, 559
Hpy166II GTNNAC 3 cut(s) 6, 761, 897
Hpy188I TCNGA 2 cut(s) 39, 370
Hpy188III TCNNGA 5 cut(s) 47, 171, 414, 476, 968
Hpy8I GTNNAC 3 cut(s) 6, 761, 897
Hpy99I CGWCG 2 cut(s) 803, 1100
HpyAV CCTTC 2 cut(s) 34, 700
HpyCH4III ACNGT 3 cut(s) 10, 869, 1049
HpyCH4IV ACGT 1 cut(s) 1095
HpyCH4V TGCA 6 cut(s) 280, 435, 813, 832, 986, 1183
HpyF3I CTNAG 1 cut(s) 1086
HpySE526I ACGT 1 cut(s) 1095
Hsp92II CATG 7 cut(s) 287, 394, 674, 691, 862, 971, 977
HspAI GCGC 2 cut(s) 361, 399
Ksp22I TGATCA 1 cut(s) 970
LmnI GCTCC 2 cut(s) 186, 1081
Lsp1109I GCAGC 2 cut(s) 324, 826
LweI GCATC 3 cut(s) 111, 444, 973
MaeI CTAG 1 cut(s) 954
MaeII ACGT 1 cut(s) 1095
MaeIII GTNAC 1 cut(s) 1029
MboII GAAGA 5 cut(s) 101, 314, 391, 474, 1055
MflI RGATCY 2 cut(s) 200, 844
MluCI AATT 5 cut(s) 99, 251, 316, 371, 632
MlyI GAGTC 1 cut(s) 101
MseI TTAA 4 cut(s) 131, 374, 458, 1091
MslI CAYNNNNRTG 3 cut(s) 921, 972, 978
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 1185
NlaIII CATG 7 cut(s) 287, 394, 674, 691, 862, 971, 977
NlaIV GGNNCC 3 cut(s) 32, 1077, 1158
NmeAIII GCCGAG 1 cut(s) 468
NsbI TGCGCA 1 cut(s) 400
NspI RCATGY 1 cut(s) 394
PagI TCATGA 1 cut(s) 967
PciI ACATGT 1 cut(s) 390
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 2 cut(s) 314, 841
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 390
PspFI CCCAGC 3 cut(s) 509, 557, 902
PspN4I GGNNCC 3 cut(s) 32, 1077, 1158
PstNI CAGNNNCTG 1 cut(s) 1053
PsuI RGATCY 2 cut(s) 200, 844
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 308, 613, 790, 1134
RsaNI GTAC 4 cut(s) 307, 612, 789, 1133
RseI CAYNNNNRTG 3 cut(s) 921, 972, 978
SaqAI TTAA 4 cut(s) 131, 374, 458, 1091
SatI GCNGC 2 cut(s) 313, 840
ScaI AGTACT 2 cut(s) 613, 790
SchI GAGTC 1 cut(s) 101
SfaNI GCATC 3 cut(s) 111, 444, 973
SfcI CTRYAG 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 921, 972, 978
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 5 cut(s) 99, 251, 316, 371, 632
SsiI CCGC 4 cut(s) 148, 665, 842, 1037
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 954
TaaI ACNGT 3 cut(s) 10, 869, 1049
TaiI ACGT 1 cut(s) 1098
TaqI TCGA 3 cut(s) 419, 714, 996
TasI AATT 5 cut(s) 99, 251, 316, 371, 632
TatI WGTACW 3 cut(s) 306, 611, 788
Tru1I TTAA 4 cut(s) 131, 374, 458, 1091
Tru9I TTAA 4 cut(s) 131, 374, 458, 1091
TscAI CASTG 2 cut(s) 874, 1054
TseI GCWGC 2 cut(s) 312, 839
TspDTI ATGAA 3 cut(s) 443, 515, 665
TspGWI ACGGA 2 cut(s) 199, 240
TspRI CASTG 2 cut(s) 874, 1054
Van91I CCANNNNNTGG 1 cut(s) 869
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XmiI GTMKAC 2 cut(s) 760, 896
XspI CTAG 1 cut(s) 954
ZrmI AGTACT 2 cut(s) 613, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.