Rh1DG164800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000371
Physical Location & Seq
Forward (+)
33875307 .. 33875675
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG164800.1

Sequence Viewer

Length: 369 bp
ATGGATCATTGCCTTCCGGTGGGTGTGAGATTCCACCCGACTGATGAAGACTTGATCGGCCACTACCTCTACCTGAAGAATAATCCCAACTCGGCCTCGGTGGCACCATCCTTGTTTCTTCCCGAGTTTGATTTGTACGGTGAGGCTGAACCCTGGATCATTTGGGAAGCCTATGGAGGACCCAATCTGAAACAACAAGATCTCTTTTTTTCACTCTCCATAAGAAGAAGGCCAATCCCCGCGGCGGCCATGCTACCCGGTATAGTCGAAGGGTTGGATCGTCGGGCACATGGAGCCAAGGTGAACCTTCCAAACTCGTTTTTGGCGAGAAGAACCAAGAAATCCCAATTGGGCGAAAGACTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

7.93

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 71 1.8e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 242
AciI CCGC 3 cut(s) 240, 242, 245
AclWI GGATC 3 cut(s) 12, 164, 285
AcoI YGGCCR 2 cut(s) 58, 246
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 19, 244
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AlwI GGATC 3 cut(s) 12, 164, 285
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 58, 93, 230, 246
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 152, 313
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 54
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 154
BcnI CCSGG 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 243, 246
BlsI GCNGC 2 cut(s) 244, 247
Bme1390I CCNGG 2 cut(s) 154, 258
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 105, 181, 295
BmrFI CCNGG 2 cut(s) 154, 258
BpiI GAAGAC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 96, 152, 240, 297
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 244
Bse3DI GCAATG 1 cut(s) 7
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 4 cut(s) 96, 152, 240, 297
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 19, 244
BseMI GCAATG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 4 cut(s) 60, 95, 232, 248
BshNI GGYRCC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 17, 258
BslI CCNNNNNNNGG 2 cut(s) 19, 244
BsnI GGCC 4 cut(s) 60, 95, 232, 248
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 5 cut(s) 4, 54, 156, 199, 277
BspACI CCGC 3 cut(s) 240, 242, 245
BspANI GGCC 4 cut(s) 60, 95, 232, 248
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 3 cut(s) 105, 181, 295
BspPI GGATC 3 cut(s) 12, 164, 285
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 7
BssECI CCNNGG 4 cut(s) 96, 152, 240, 297
BssMI GATC 5 cut(s) 4, 54, 156, 199, 277
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 5 cut(s) 7, 57, 159, 202, 280
BstMBI GATC 5 cut(s) 4, 54, 156, 199, 277
BstMWI GCNNNNNNNGC 2 cut(s) 101, 293
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 152, 256
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 4 cut(s) 60, 95, 232, 248
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 250, 290
CviJI RGCY 7 cut(s) 60, 95, 146, 170, 232, 248, 296
CviKI_1 RGCY 7 cut(s) 60, 95, 146, 170, 232, 248, 296
CviQI GTAC 1 cut(s) 136
DpnI GATC 5 cut(s) 6, 56, 158, 201, 279
DpnII GATC 5 cut(s) 4, 54, 156, 199, 277
EaeI YGGCCR 2 cut(s) 58, 246
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 253, 293
FaiI YATR 5 cut(s) 174, 221, 251, 263, 291
FatI CATG 2 cut(s) 249, 289
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 243, 246
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 243, 246
GluI GCNGC 2 cut(s) 243, 246
HaeIII GGCC 4 cut(s) 60, 95, 232, 248
HapII CCGG 2 cut(s) 17, 258
Hin1II CATG 2 cut(s) 253, 293
HinfI GANTC 1 cut(s) 30
HpaII CCGG 2 cut(s) 17, 258
HphI GGTGA 2 cut(s) 152, 313
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 4 cut(s) 23, 222, 263, 317
HpyCH4III ACNGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 293
Hsp92II CATG 2 cut(s) 253, 293
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 5 cut(s) 4, 54, 156, 199, 277
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 5 cut(s) 30, 86, 139, 166, 271
MalI GATC 5 cut(s) 6, 56, 158, 201, 279
MboI GATC 5 cut(s) 4, 54, 156, 199, 277
MboII GAAGA 5 cut(s) 59, 88, 110, 237, 342
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 2 cut(s) 347, 364
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 77, 106, 136, 170
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 17, 258
MspR9I CCNGG 2 cut(s) 154, 258
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 101, 293
NciI CCSGG 1 cut(s) 258
NdeII GATC 5 cut(s) 4, 54, 156, 199, 277
NlaIII CATG 2 cut(s) 253, 293
NlaIV GGNNCC 3 cut(s) 105, 181, 295
NmeAIII GCCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 244, 247
PpuMI RGGWCCY 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 105, 181, 295
PspPI GGNCC 1 cut(s) 179
PspPPI RGGWCCY 1 cut(s) 179
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacII CCGCGG 1 cut(s) 243
SatI GCNGC 2 cut(s) 243, 246
Sau3AI GATC 5 cut(s) 4, 54, 156, 199, 277
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 154, 258
SduI GDGCHC 1 cut(s) 289
SetI ASST 4 cut(s) 69, 75, 303, 309
Sfr303I CCGCGG 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 1 cut(s) 179
Sse9I AATT 2 cut(s) 347, 364
SsiI CCGC 3 cut(s) 240, 242, 245
StyD4I CCNGG 2 cut(s) 152, 256
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 347, 364
TauI GCSGC 2 cut(s) 245, 248
TfiI GAWTC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.