Rw0G020640
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00944
OG0000371
Physical Location & Seq
Forward (+)
5691 .. 25430
19740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020640.1

Sequence Viewer

Length: 510 bp
ATGGATTGTTGTTTTCCGGCGGGTGTCAGATTCCACCCGACTGATGAAGAATTGATCGGCCACTATCTCTACCTGAAGAATTATCCCAAGTCGGCCTCGGCAGCACCATCCTTGCTTCTTCCTGAGTTTGATTTATACAGTGAGGCCGAACCCTGGATCATTTGGGAAGCCTATGGAGGACCTAATCTGAAACAACAAGATCTTTTTTTTTTTATACACCCCATAAGAAGAAGGCCAATCCCCGGTTGGATTGTCGGGCACTGGAGCCAAGGTGAACCGTCCAAACCCATTTTTGGTGAGCAGAACCAGGAAACCCAAATTGGGCGAAAGACAAAATTGAGGTATGAGAACAAACTGGTGTTGGAACAACACGGTTGTTGGATTATGGAGGAATATAGCGTTGTTGATGATCACTCCAGTTCTTCTGCTGCTCATGATGATTATGTGATTTGCCGACTCCGACAAAACAACACCAACAATCATCATCATCTGGATAAAGAGGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

169

Amino Acids

19.73

Weight (kDa)

5.63

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 133 2.2e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 95
AfiI CCNNNNNNNGG 4 cut(s) 153, 242, 293, 321
AjnI CCWGG 2 cut(s) 152, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AlwI GGATC 1 cut(s) 164
AoxI GGCC 4 cut(s) 58, 93, 144, 233
ApeKI GCWGC 2 cut(s) 101, 428
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 284, 308
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 113, 415
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 2 cut(s) 154, 308
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 243
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 102, 429
BlsI GCNGC 2 cut(s) 103, 430
Bme1390I CCNGG 3 cut(s) 154, 243, 308
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 154, 243, 308
BpmI CTGGAG 2 cut(s) 283, 400
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 96, 152, 241, 268
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 242, 293, 321
Bse1I ACTGG 3 cut(s) 266, 360, 417
BseBI CCWGG 2 cut(s) 154, 308
BseDI CCNNGG 4 cut(s) 96, 152, 241, 268
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 4 cut(s) 153, 242, 293, 321
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 266, 360, 417
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 113, 415
BshFI GGCC 4 cut(s) 60, 95, 146, 235
BsiSI CCGG 2 cut(s) 17, 243
BslI CCNNNNNNNGG 4 cut(s) 153, 242, 293, 321
BsnI GGCC 4 cut(s) 60, 95, 146, 235
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 4 cut(s) 54, 156, 199, 409
BspACI CCGC 1 cut(s) 20
BspANI GGCC 4 cut(s) 60, 95, 146, 235
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 3 cut(s) 266, 360, 417
BssECI CCNNGG 4 cut(s) 96, 152, 241, 268
BssMI GATC 4 cut(s) 54, 156, 199, 409
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 154, 308
Bst4CI ACNGT 3 cut(s) 140, 279, 374
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 4 cut(s) 57, 159, 202, 412
BstMBI GATC 4 cut(s) 54, 156, 199, 409
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 2 cut(s) 154, 308
BstSCI CCNGG 3 cut(s) 152, 241, 306
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 113, 415
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 4 cut(s) 60, 95, 146, 235
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 145, 259
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 179
CviAII CATG 1 cut(s) 434
CviJI RGCY 6 cut(s) 60, 95, 146, 170, 235, 267
CviKI_1 RGCY 6 cut(s) 60, 95, 146, 170, 235, 267
DdeI CTNAG 1 cut(s) 123
DpnI GATC 4 cut(s) 56, 158, 201, 411
DpnII GATC 4 cut(s) 54, 156, 199, 409
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 152, 306
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 437
FaiI YATR 9 cut(s) 136, 174, 215, 224, 345, 386, 396, 435, 444
FatI CATG 1 cut(s) 433
FauI CCCGC 1 cut(s) 13
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 102, 429
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 102, 429
GluI GCNGC 2 cut(s) 102, 429
GsuI CTGGAG 2 cut(s) 283, 400
HaeIII GGCC 4 cut(s) 60, 95, 146, 235
HapII CCGG 2 cut(s) 17, 243
Hin1II CATG 1 cut(s) 437
HinfI GANTC 2 cut(s) 30, 456
HpaII CCGG 2 cut(s) 17, 243
HphI GGTGA 2 cut(s) 284, 308
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 29, 189, 461
Hpy188III TCNNGA 3 cut(s) 122, 434, 491
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 3 cut(s) 140, 279, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 54, 156, 199, 409
LmnI GCTCC 2 cut(s) 264, 502
Lsp1109I GCAGC 2 cut(s) 113, 415
MalI GATC 4 cut(s) 56, 158, 201, 411
MboI GATC 4 cut(s) 54, 156, 199, 409
MboII GAAGA 5 cut(s) 59, 88, 110, 240, 414
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 4 cut(s) 50, 79, 318, 335
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 4 cut(s) 227, 342, 359, 484
MnlI CCTC 6 cut(s) 106, 136, 170, 333, 382, 493
MspI CCGG 2 cut(s) 17, 243
MspR9I CCNGG 3 cut(s) 154, 243, 308
MvaI CCWGG 2 cut(s) 154, 308
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 243
NdeII GATC 4 cut(s) 54, 156, 199, 409
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 433
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 103, 430
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
PpuMI RGGWCCY 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 152, 306
PspGI CCWGG 2 cut(s) 152, 306
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 179
PspPPI RGGWCCY 1 cut(s) 179
PsuI RGATCY 1 cut(s) 199
SatI GCNGC 2 cut(s) 102, 429
Sau3AI GATC 4 cut(s) 54, 156, 199, 409
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 154, 243, 308
SduI GDGCHC 1 cut(s) 261
SetI ASST 4 cut(s) 75, 184, 274, 344
SinI GGWCC 1 cut(s) 179
Sse9I AATT 4 cut(s) 50, 79, 318, 335
SsiI CCGC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 152, 241, 306
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 3 cut(s) 140, 279, 374
TasI AATT 4 cut(s) 50, 79, 318, 335
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 2 cut(s) 145, 266
TseI GCWGC 2 cut(s) 101, 428
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 2 cut(s) 145, 266
VpaK11BI GGWCC 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.