Rmu_sc0000588.1_g000007

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000588.1
OG0000371
Physical Location & Seq
Reverse (-)
26943 .. 27197
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000588.1_g000007.1.cds

Sequence Viewer

Length: 255 bp
atggctaacgttccggtaggtttctggttccacccgactgaagatgagctcattcggttctacctgtatatgaagaacaaggtgagcgcacgtgaagatgactctgaagcggcgacgacggtggtgccagagtttgacctctacggcgagacccagccctggaacatttgggtagctcacggcggagcggatctgcacgaccaggatttgttcttctttaaaaagctgaataaggtgaatccccatggcacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

84

Amino Acids

9.74

Weight (kDa)

4.93

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 188
AciI CCGC 3 cut(s) 110, 183, 188
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 60, 126
AcvI CACGTG 2 cut(s) 92, 252
AfiI CCNNNNNNNGG 1 cut(s) 159
AjnI CCWGG 2 cut(s) 158, 201
AluBI AGCT 3 cut(s) 49, 176, 226
AluI AGCT 3 cut(s) 49, 176, 226
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 94, 247
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 51
BbrPI CACGTG 2 cut(s) 92, 252
Bbv12I GWGCWC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 160, 196
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 160, 203
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 160, 203
BmiI GGNNCC 2 cut(s) 29, 126
BmrFI CCNGG 2 cut(s) 160, 203
BsaAI YACGTR 2 cut(s) 92, 252
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 158, 244
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseBI CCWGG 2 cut(s) 160, 203
BseDI CCNNGG 2 cut(s) 158, 244
BseLI CCNNNNNNNGG 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 3 cut(s) 110, 183, 188
BspLI GGNNCC 2 cut(s) 29, 126
BspPI GGATC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 158, 244
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 160, 203
Bst4CI ACNGT 1 cut(s) 121
BstBAI YACGTR 2 cut(s) 92, 252
BstDSI CCRYGG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 160, 203
BstSCI CCNGG 2 cut(s) 158, 201
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 244
CfoI GCGC 1 cut(s) 89
CviAII CATG 1 cut(s) 245
CviJI RGCY 5 cut(s) 5, 49, 157, 176, 226
CviKI_1 RGCY 5 cut(s) 5, 49, 157, 176, 226
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 220
EciI GGCGGA 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 60, 126
Eco72I CACGTG 2 cut(s) 92, 252
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 158, 201
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 69, 71, 246
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 157
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 2 cut(s) 101, 238
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 94, 247
Hpy188I TCNGA 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 118, 121
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 3 cut(s) 9, 91, 251
HpyCH4V TGCA 1 cut(s) 196
HpySE526I ACGT 3 cut(s) 9, 91, 251
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 9 cut(s) 10, 27, 77, 141, 145, 167, 172, 188, 215
MaeII ACGT 3 cut(s) 9, 91, 251
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 190
MboII GAAGA 4 cut(s) 53, 85, 107, 205
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 149
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 160, 203
MvaI CCWGG 2 cut(s) 160, 203
NcoI CCATGG 1 cut(s) 244
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 29, 126
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 95
PmaCI CACGTG 2 cut(s) 92, 252
PmlI CACGTG 2 cut(s) 92, 252
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 2 cut(s) 92, 252
Psp124BI GAGCTC 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 158, 201
PspCI CACGTG 2 cut(s) 92, 252
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 2 cut(s) 158, 201
PspN4I GGNNCC 2 cut(s) 29, 126
PsuI RGATCY 1 cut(s) 190
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 160, 203
SduI GDGCHC 1 cut(s) 51
SsiI CCGC 3 cut(s) 110, 183, 188
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 158, 201
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 3 cut(s) 12, 94, 254
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.