Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8144300.1

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 194

Gene Structure 194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8144300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 181 bp

atggagaagctcagttttgtgaggaatggagagctgagattgcctcctggttttcggttccatcctactgacgaagagcttgttcttcagtacttgaagcgcaaggtctactcgtgtcctttgcctgcttccatcatccctgaggttgaagtctgcaagtctgatccttgggatttgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

60

Amino Acids

6.99

Weight (kDa)

5.7

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	97, 149
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	10, 34, 79
AluI	AGCT	3 cut(s)	10, 34, 79
AlwI	GGATC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	141
BauI	CACGAG	1 cut(s)	112
BccI	CCATC	2 cut(s)	69, 140
BciT130I	CCWGG	1 cut(s)	48
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	61, 135
BseMII	CTCAG	3 cut(s)	25, 26, 132
Bsp143I	GATC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	24, 27, 133
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	11, 35, 141
BstF5I	GGATG	2 cut(s)	61, 135
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	61, 135
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	3 cut(s)	10, 34, 79
CviKI_1	RGCY	3 cut(s)	10, 34, 79
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	11, 35, 141
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	2 cut(s)	48, 122
GlaI	GCGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	3 cut(s)	11, 35, 141
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	69
LpnPI	CCDG	4 cut(s)	33, 60, 138, 153
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	77, 86
MnlI	CCTC	3 cut(s)	15, 54, 136
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	12, 36, 81, 108, 147
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	167
TatI	WGTACW	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.