RLG00000001105

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000371
Physical Location & Seq
Forward (+)
10411755 .. 10412477
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001105

Sequence Viewer

Length: 510 bp
ATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTGCTCATGATAAGGAATATGAGACTCAGCATTTGATGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGCTTGATCTTGCATTAGAAGAAGTAGAAAGGGATACAATATCCCCTTCACCCTCAGAACAACAAATGTCATTGACTTCACAGATGCTGGCCAATCCTTCCAAAGAAAATACATATAAAGTACCACTTGTACCTCATATTGGTTCAAAATGGCAACAACCAACAAATAAAAATGGGTTGGTTATTAGTGAGGCACAAGGCAGTAGTGAAGATAATGAATTTAGTTTTGCCTTTGATGAAATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTCAGCAACTACAACTTTGGAGATGAGTTCTTGTTGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCTTGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

4.05

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 338, 401
AfaI GTAC 3 cut(s) 91, 243, 252
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 4 cut(s) 16, 124, 461, 496
AluI AGCT 4 cut(s) 16, 124, 461, 496
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 384
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 2 cut(s) 338, 401
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AsuHPI GGTGA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 148
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
BmsI GCATC 1 cut(s) 195
Bsa29I ATCGAT 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 453
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 83, 189
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 34, 127, 376
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 82, 188
BspDI ATCGAT 1 cut(s) 453
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 31
BssMI GATC 3 cut(s) 34, 127, 376
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 69, 175
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 3 cut(s) 37, 130, 379
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 34, 127, 376
BstV1I GCAGC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 453
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 3 cut(s) 90, 242, 251
CviAII CATG 2 cut(s) 50, 380
CviJI RGCY 5 cut(s) 16, 124, 212, 461, 496
CviKI_1 RGCY 5 cut(s) 16, 124, 212, 461, 496
CviQI GTAC 3 cut(s) 90, 242, 251
DdeI CTNAG 2 cut(s) 69, 175
DpnI GATC 3 cut(s) 36, 129, 378
DpnII GATC 3 cut(s) 34, 127, 376
EaeI YGGCCR 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 401
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 2 cut(s) 53, 383
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 2 cut(s) 49, 379
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 497
GluI GCNGC 1 cut(s) 497
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 2 cut(s) 53, 383
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 162
Hpy188I TCNGA 3 cut(s) 39, 178, 397
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 177, 228, 434
HpyCH4V TGCA 2 cut(s) 116, 134
HpyF3I CTNAG 2 cut(s) 69, 175
Hsp92II CATG 2 cut(s) 53, 383
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 34, 127, 376
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 195
MalI GATC 3 cut(s) 36, 129, 378
MboI GATC 3 cut(s) 34, 127, 376
MboII GAAGA 2 cut(s) 152, 341
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 338, 401
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 4 cut(s) 79, 184, 264, 304
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 2 cut(s) 461, 496
NdeII GATC 3 cut(s) 34, 127, 376
NlaIII CATG 2 cut(s) 53, 383
NsiI ATGCAT 1 cut(s) 118
PagI TCATGA 1 cut(s) 49
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 208
PvuII CAGCTG 2 cut(s) 461, 496
RsaI GTAC 3 cut(s) 91, 243, 252
RsaNI GTAC 3 cut(s) 90, 242, 251
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 3 cut(s) 34, 127, 376
SchI GAGTC 1 cut(s) 61
SetI ASST 5 cut(s) 18, 126, 256, 463, 498
SfaNI GCATC 1 cut(s) 195
SgeI CNNG 8 cut(s) 62, 137, 143, 221, 260, 329, 392, 445
Sse9I AATT 2 cut(s) 338, 401
TaqI TCGA 1 cut(s) 453
TasI AATT 2 cut(s) 338, 401
TseI GCWGC 1 cut(s) 496
TspDTI ATGAA 3 cut(s) 351, 372, 414
XapI RAATTY 2 cut(s) 338, 401
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.