Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Forward (+)

9266138 .. 9266849

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1124900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGTCGTCCTCTTCTCTCTCTATCCACCCTGTCTCTCTCTCCTCGCATTGTCTCTAACACCCATTACTATAAAAGAAGCCACACTCTCTCCTTGAAACCCCCCCCCCCATCCACCTCTCCACGCTTTTATTTCCATTGGGACTCTTCTTTCCTTCTTGTTCTTGTTCCCTCTTGTTCTTGTCTAATCTCCTACTTTGTTTGTATTATCCAATCCCCAACGGACTATAAGACCTTGTCACGACTGTGTTTGCTTAGGATTAGATTTCTCAGTTCGGATTGGACTAAAAGACTAGCTTTTCAGTCCATTGGGATTTTCTCGGACATGGAGAGGATTAGTTTTGTGAAGAATGGTGTGCTGAGATTGCCTCCCGGTTTTCGATTCCACCCGACTGACGAGGAGCTTGTTCTGCAGTACTTGCGGCGCAAGGCTTACTCCTGCCCCTTGCCTGCCTCCATCATCCCGGAGGTCGATGTCTGCAAGGCCGACCCTTGGGATTTGCCAGCTACAATGCCAAATACCTACCAATCAAAACCCAAATCGTATTTTAGACGGAAATGGTCTCGAATCTCCCAATTTTCCGGTTCTGCACTCGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

201

Amino Acids

23.03

Weight (kDa)

9.83

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	123 - 183	2.7e-17	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	296, 403, 506
AluI	AGCT	3 cut(s)	296, 403, 506
Alw26I	GTCTC	3 cut(s)	39, 58, 567
AoxI	GGCC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	426
AsuC2I	CCSGG	2 cut(s)	372, 464
BccI	CCATC	2 cut(s)	118, 464
BcnI	CCSGG	2 cut(s)	372, 464
BcoDI	GTCTC	3 cut(s)	39, 58, 567
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	372, 464
BmrFI	CCNGG	2 cut(s)	372, 464
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	372, 464
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	2 cut(s)	110, 459
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	283, 350
BseRI	GAGGAG	2 cut(s)	33, 413
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	372, 464, 582
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	3 cut(s)	39, 58, 567
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	567
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	282, 351
BspMAI	CTGCAG	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	567
BssECI	CCNNGG	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	18, 151
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	450, 504
BstDEI	CTNAG	3 cut(s)	254, 269, 359
BstF5I	GGATG	2 cut(s)	110, 459
BstHHI	GCGC	1 cut(s)	426
BstMAI	GTCTC	3 cut(s)	39, 58, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 409, 418
BstSCI	CCNGG	2 cut(s)	370, 462
BstSFI	CTRYAG	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	110, 459
Cac8I	GCNNGC	2 cut(s)	450, 504
CfoI	GCGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	6 cut(s)	81, 296, 403, 431, 485, 506
CviKI_1	RGCY	6 cut(s)	81, 296, 403, 431, 485, 506
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	254, 269, 359
Eam1104I	CTCTTC	2 cut(s)	18, 151
EarI	CTCTTC	2 cut(s)	18, 151
Eco130I	CCWWGG	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	1 cut(s)	328
FaiI	YATR	3 cut(s)	72, 228, 326
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	97, 446
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	3 cut(s)	372, 464, 582
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	143, 381, 567
HpaII	CCGG	3 cut(s)	372, 464, 582
Hpy188I	TCNGA	2 cut(s)	277, 322
Hpy188III	TCNNGA	2 cut(s)	240, 564
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	412, 480, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 409, 418
HpyF3I	CTNAG	3 cut(s)	254, 269, 359
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	7 cut(s)	44, 385, 451, 462, 477, 516, 595
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	5, 138, 358
MluCI	AATT	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	21, 54, 127, 181, 324, 378, 391, 460, 463
MslI	CAYNNNNRTG	1 cut(s)	244
MspI	CCGG	3 cut(s)	372, 464, 582
MspR9I	CCNGG	2 cut(s)	372, 464
MwoI	GCNNNNNNNGC	3 cut(s)	364, 409, 418
NciI	CCSGG	2 cut(s)	372, 464
NlaIII	CATG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	381, 567
PflFI	GACNNNGTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	244
SatI	GCNGC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	372, 464
SetI	ASST	7 cut(s)	119, 236, 298, 405, 471, 508, 524
SfcI	CTRYAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	575
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	370, 462
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	379, 471, 565
TasI	AATT	1 cut(s)	575
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	381, 567
TseFI	GTSAC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	236, 568
Tth111I	GACNNNGTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.