Prupe.2G196800_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000371
Physical Location & Seq
Reverse (-)
23419271 .. 23419609
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G196800.1

Sequence Viewer

Length: 264 bp
ATGACTAGTATATCTGTGAGTGTGAATGGAGAATGCAAAGTTCCCCCTGGCTTCAGATTTCAACCAACCGAAGAGGAGCTCTTGCTATATTACCTGAGGAAGAGGGTCTCATGTGAGAAGATCGATCTAGACATAATTTGTGACATTGATATCAATAAGTTTGAGCCATGGGACATTCAAGAAAAATGCAAAATAGGAAGCATGCCTCAAAACGACTGCTACTTCTTTAGCCACAAGGACAAGAAGTACGCGAGTGGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

5.32

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 2 cut(s) 62, 179
AhlI ACTAGT 1 cut(s) 5
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 95
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 128
Bme1390I CCNGG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 46, 167
Bse21I CCTNAGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 46, 167
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 120, 124
Bsp19I CCATGG 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 46, 167
BssMI GATC 2 cut(s) 120, 124
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 66, 95
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 2 cut(s) 123, 127
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 120, 124
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 111, 168, 202
CviJI RGCY 4 cut(s) 51, 79, 166, 231
CviKI_1 RGCY 4 cut(s) 51, 79, 166, 231
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 95
DpnI GATC 2 cut(s) 122, 126
DpnII GATC 2 cut(s) 120, 124
Eam1104I CTCTTC 2 cut(s) 66, 95
EarI CTCTTC 2 cut(s) 66, 95
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 112
Eco32I GATATC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 3 cut(s) 114, 171, 205
FaiI YATR 6 cut(s) 11, 88, 112, 134, 169, 203
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 110, 167, 201
FriOI GRGCYC 1 cut(s) 81
FspBI CTAG 2 cut(s) 6, 128
Hin1II CATG 3 cut(s) 114, 171, 205
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 128, 179
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 36, 189
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 3 cut(s) 114, 171, 205
Kzo9I GATC 2 cut(s) 120, 124
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 33, 60, 107
MaeI CTAG 2 cut(s) 6, 128
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 122, 126
MboI GATC 2 cut(s) 120, 124
MboII GAAGA 3 cut(s) 83, 112, 130
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 135
MnlI CCTC 4 cut(s) 67, 90, 96, 216
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 251
NcoI CCATGG 1 cut(s) 167
NdeII GATC 2 cut(s) 120, 124
NlaIII CATG 3 cut(s) 114, 171, 205
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PctI GAATGC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 120, 124
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 81
SetI ASST 3 cut(s) 81, 96, 263
SpeI ACTAGT 1 cut(s) 5
SphI GCATGC 1 cut(s) 205
Sse9I AATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 6, 128
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 135
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 205
XspI CTAG 2 cut(s) 6, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.