Rmu_sc0000070.1_g000054

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000070.1
Physical Location & Seq
Forward (+)
186863 .. 187857
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000070.1_g000054.1.cds

Sequence Viewer

Length: 312 bp
atgtctattgggggcaaaaaactttccggtgagattttcaacaaattccggtgggcggcagccgatgaccggattccggcggccggtgaccggaatccggcgaaagttggccggaatccggcgaaagttggccggattccggcggccggtgacgggattccggcggccggttactggttccacccgactgacgacgagctcatccggtactacctgtatctgaagaacaaggtgagcgagggcgtagatgaccctgaagcggcggtgatgatggtgccggagtttgacctctacggcgagaccgagccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

5.08

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 6 cut(s) 56, 80, 143, 164, 260, 263
AcoI YGGCCR 5 cut(s) 81, 109, 130, 144, 165
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 2 cut(s) 242, 276
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 5 cut(s) 81, 109, 130, 144, 165
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 44
AsuHPI GGTGA 5 cut(s) 41, 98, 161, 244, 277
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 2 cut(s) 201, 309
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 310
BisI GCNGC 6 cut(s) 57, 60, 81, 144, 165, 261
BlsI GCNGC 6 cut(s) 58, 61, 82, 145, 166, 262
BmiI GGNNCC 2 cut(s) 179, 276
BsaI GGTCTC 1 cut(s) 293
BsaWI WCCGGW 5 cut(s) 26, 48, 69, 90, 204
Bse118I RCCGGY 3 cut(s) 83, 146, 167
Bse1I ACTGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 179
BseX3I CGGCCG 3 cut(s) 81, 144, 165
BseXI GCAGC 1 cut(s) 71
Bsh1285I CGRYCG 3 cut(s) 84, 147, 168
BshFI GGCC 5 cut(s) 83, 111, 132, 146, 167
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 3 cut(s) 84, 147, 168
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 5 cut(s) 83, 111, 132, 146, 167
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 201, 309
BspACI CCGC 6 cut(s) 56, 80, 143, 164, 260, 263
BspANI GGCC 5 cut(s) 83, 111, 132, 146, 167
BspLI GGNNCC 2 cut(s) 179, 276
BspT107I GGYRCC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 3 cut(s) 83, 146, 167
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 3 cut(s) 83, 146, 167
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 293
BstMCI CGRYCG 3 cut(s) 84, 147, 168
BstPI GGTNACC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 71
BstZI CGGCCG 3 cut(s) 81, 144, 165
BsuRI GGCC 5 cut(s) 83, 111, 132, 146, 167
BtsCI GGATG 1 cut(s) 201
Cfr10I RCCGGY 3 cut(s) 83, 146, 167
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 8 cut(s) 62, 83, 111, 132, 146, 167, 199, 307
CviKI_1 RGCY 8 cut(s) 62, 83, 111, 132, 146, 167, 199, 307
CviQI GTAC 1 cut(s) 208
EaeI YGGCCR 5 cut(s) 81, 109, 130, 144, 165
EagI CGGCCG 3 cut(s) 81, 144, 165
Ecl136II GAGCTC 1 cut(s) 199
EclXI CGGCCG 3 cut(s) 81, 144, 165
Eco24I GRGCYC 2 cut(s) 201, 309
Eco31I GGTCTC 1 cut(s) 293
Eco52I CGGCCG 3 cut(s) 81, 144, 165
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 2 cut(s) 242, 276
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 201, 309
Fnu4HI GCNGC 6 cut(s) 57, 60, 81, 144, 165, 261
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 2 cut(s) 201, 309
Fsp4HI GCNGC 6 cut(s) 57, 60, 81, 144, 165, 261
FspBI CTAG 1 cut(s) 310
GluI GCNGC 6 cut(s) 57, 60, 81, 144, 165, 261
HaeIII GGCC 5 cut(s) 83, 111, 132, 146, 167
HinfI GANTC 5 cut(s) 73, 94, 115, 136, 157
HphI GGTGA 5 cut(s) 41, 98, 161, 244, 277
Hpy188I TCNGA 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 3 cut(s) 86, 149, 170
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 201, 309
MluCI AATT 1 cut(s) 44
MnlI CCTC 2 cut(s) 232, 299
NlaIV GGNNCC 2 cut(s) 179, 276
NmuCI GTSAC 2 cut(s) 86, 149
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 5 cut(s) 73, 94, 115, 136, 157
PkrI GCNGC 6 cut(s) 58, 61, 82, 145, 166, 262
Psp124BI GAGCTC 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 179, 276
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 201
SatI GCNGC 6 cut(s) 57, 60, 81, 144, 165, 261
SduI GDGCHC 2 cut(s) 201, 309
SetI ASST 4 cut(s) 201, 216, 234, 291
Sse9I AATT 1 cut(s) 44
SsiI CCGC 6 cut(s) 56, 80, 143, 164, 260, 263
SspMI CTAG 1 cut(s) 310
SstI GAGCTC 1 cut(s) 201
TasI AATT 1 cut(s) 44
TauI GCSGC 5 cut(s) 59, 83, 146, 167, 263
TfiI GAWTC 5 cut(s) 73, 94, 115, 136, 157
TseFI GTSAC 2 cut(s) 86, 149
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 2 cut(s) 86, 149
XapI RAATTY 1 cut(s) 44
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.