Prupe.1G106100_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000371
Physical Location & Seq
Reverse (-)
8505856 .. 8506968
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G106100.1

Sequence Viewer

Length: 1113 bp
ATGGAAGAGTCTCTTGTGCCGTTCGGTTTTCGTTTCAGACCCTCCGATGAAGAGATTGTGGGTTCCTTTCTCTACCCGTTTTTGGTAGAGAGCAAGCCCTTCATGTCGCTATACAACAATTTCTTGCATGCCTGCAATCTCTTCGGCAACAAGACAGAGCCTTCGGAGATCTGGAAAAAATACGGAGGGCCGCAACTCGTTGATACAGACTTGTACTTCATCTCCAAGCTCAAGAAGTTAACCCCCAAGCGGATGGATCGAAGGATTGGCAACGGGGGTACTTGGAGCGAAACTGAATCCTCCAAATTGGTTCATGAAAAGGTCTCTGGAAATCCCAACCCAAACCCCATTGGCCGAAAGAGAAAGTTTCGCTACGAGAATAAGGGTTCCGAGGATCACACAGGGTGGCTACTAGATGAATATAGTCTTTTCGATGGTCCCAAGAATGACTACAATCAACGTAGTTACGATTTTGATTTTGTCATTTGTCGGATGAGGAAGAACGATAGGGTTGGGATCAAGGCAACAAATCTAAAGCGTGGATCACAAGATAAAGAAGAAAAGAAGATGACCACAAACAAAAAGATGAAAACAGATGATCAAATGGGATCAACAGAATCATCATCTCAACAAGGCTGCTCTTCTAGTCCAATTGGTGGTGATCTTGTGGGCTTTGATCCCATTGATCTGACAATCTTTGAGGAAAATACAATGGCCGACATGGAACAACTACTTGGTGAAGCTTGGAGCCCGAGTAATTCTGAGGATGCAGTCTCTTATGATGTTGATCCGATTGGTGAAACACAAATTAACTTTGAGAAAGAGGAAAACACGATGGCCGACATGGAACAACTACTTGGTGAAGCTTGGAGCCCAAGTAAATTTGAGAATGTGGTTTCTCACGATGTTGATCCGATTGGTGAAACCCAAATTAACTTTGAGAATGAGGAAAATACGATGGCCGATATGGAACAACTACTTGGTGAAGCTTGGAGCCCAAGTAACTTTGAGAATGTGGTCTCTCATGATGTTGATCCGATTGGTGAAACCCAAAGTAGCCAATTGTCTAACTGGTCCCAAGCGATATTAAATCAGCTCCTGGTTGGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

371

Amino Acids

41.97

Weight (kDa)

4.62

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 2 cut(s) 191, 250
AclWI GGATC 9 cut(s) 264, 402, 524, 550, 616, 671, 782, 905, 1028
AcoI YGGCCR 4 cut(s) 352, 714, 837, 960
AcsI RAATTY 1 cut(s) 881
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 2 cut(s) 215, 280
AfiI CCNNNNNNNGG 3 cut(s) 82, 249, 656
AjnI CCWGG 1 cut(s) 1098
AjuI GAANNNNNNNTTGG 6 cut(s) 717, 749, 840, 872, 963, 995
AluBI AGCT 5 cut(s) 229, 743, 866, 989, 1096
AluI AGCT 5 cut(s) 229, 743, 866, 989, 1096
Alw26I GTCTC 4 cut(s) 15, 328, 778, 1024
AlwI GGATC 9 cut(s) 264, 402, 524, 550, 616, 671, 782, 905, 1028
AlwNI CAGNNNCTG 1 cut(s) 1099
Ama87I CYCGRG 1 cut(s) 751
AoxI GGCC 5 cut(s) 188, 352, 714, 837, 960
ApeKI GCWGC 1 cut(s) 636
ApoI RAATTY 1 cut(s) 881
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspS9I GGNCC 3 cut(s) 188, 437, 1074
AsuHPI GGTGA 7 cut(s) 671, 749, 809, 872, 932, 995, 1055
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 2 cut(s) 437, 1074
BanII GRGCYC 3 cut(s) 752, 875, 998
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 247, 428, 829, 952
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 1100
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 4 cut(s) 15, 328, 778, 1024
BfaI CTAG 2 cut(s) 413, 645
BglII AGATCT 1 cut(s) 168
BisI GCNGC 2 cut(s) 191, 637
BlsI GCNGC 2 cut(s) 192, 638
Bme1390I CCNGG 1 cut(s) 1100
Bme18I GGWCC 2 cut(s) 437, 1074
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 3 cut(s) 188, 437, 1074
BmiI GGNNCC 7 cut(s) 64, 388, 439, 749, 872, 995, 1076
BmrFI CCNGG 1 cut(s) 1100
BmsI GCATC 1 cut(s) 757
BpuEI CTTGAG 1 cut(s) 215
BsaBI GATNNNNATC 3 cut(s) 786, 909, 1032
BsaI GGTCTC 2 cut(s) 328, 1024
BsaJI CCNNGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 8 cut(s) 206, 236, 739, 769, 862, 892, 985, 1015
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 249, 656
Bse1I ACTGG 1 cut(s) 1076
Bse8I GATNNNNATC 3 cut(s) 786, 909, 1032
BseBI CCWGG 1 cut(s) 1100
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 3 cut(s) 258, 498, 772
BseJI GATNNNNATC 3 cut(s) 786, 909, 1032
BseLI CCNNNNNNNGG 3 cut(s) 82, 249, 656
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 1 cut(s) 1076
BseXI GCAGC 1 cut(s) 623
BshFI GGCC 5 cut(s) 190, 354, 716, 839, 962
BsiHKCI CYCGRG 1 cut(s) 751
BslFI GGGAC 2 cut(s) 423, 1060
BslI CCNNNNNNNGG 3 cut(s) 82, 249, 656
BsmAI GTCTC 4 cut(s) 15, 328, 778, 1024
BsmFI GGGAC 2 cut(s) 423, 1060
BsnI GGCC 5 cut(s) 190, 354, 716, 839, 962
Bso31I GGTCTC 2 cut(s) 328, 1024
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 3 cut(s) 752, 875, 998
BspACI CCGC 2 cut(s) 191, 250
BspANI GGCC 5 cut(s) 190, 354, 716, 839, 962
BspCNI CTCAG 1 cut(s) 754
BspHI TCATGA 2 cut(s) 313, 1024
BspLI GGNNCC 7 cut(s) 64, 388, 439, 749, 872, 995, 1076
BspPI GGATC 9 cut(s) 264, 402, 524, 550, 616, 671, 782, 905, 1028
BspQI GCTCTTC 1 cut(s) 646
BspTNI GGTCTC 2 cut(s) 328, 1024
BsrI ACTGG 1 cut(s) 1076
BssECI CCNNGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 1100
Bst6I CTCTTC 3 cut(s) 45, 146, 646
BstC8I GCNNGC 3 cut(s) 95, 129, 133
BstDEI CTNAG 1 cut(s) 762
BstF5I GGATG 3 cut(s) 258, 498, 772
BstMAI GTCTC 4 cut(s) 15, 328, 778, 1024
BstNI CCWGG 1 cut(s) 1100
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 1098
BstV1I GCAGC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 5 cut(s) 190, 354, 716, 839, 962
BtsCI GGATG 3 cut(s) 258, 498, 772
Cac8I GCNNGC 3 cut(s) 95, 129, 133
CaiI CAGNNNCTG 1 cut(s) 1099
CciI TCATGA 2 cut(s) 313, 1024
Cfr13I GGNCC 3 cut(s) 188, 437, 1074
Csp6I GTAC 2 cut(s) 214, 279
CviAII CATG 6 cut(s) 103, 128, 314, 721, 844, 1025
CviQI GTAC 2 cut(s) 214, 279
DdeI CTNAG 1 cut(s) 762
DraIII CACNNNGTG 1 cut(s) 405
EaeI YGGCCR 4 cut(s) 352, 714, 837, 960
Eam1104I CTCTTC 3 cut(s) 45, 146, 646
EarI CTCTTC 3 cut(s) 45, 146, 646
Eco24I GRGCYC 3 cut(s) 752, 875, 998
Eco31I GGTCTC 2 cut(s) 328, 1024
Eco47I GGWCC 2 cut(s) 437, 1074
Eco88I CYCGRG 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 1098
EcoT38I GRGCYC 3 cut(s) 752, 875, 998
FaeI CATG 6 cut(s) 106, 131, 317, 724, 847, 1028
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 2 cut(s) 423, 1060
FatI CATG 6 cut(s) 102, 127, 313, 720, 843, 1024
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 191, 637
FokI GGATG 3 cut(s) 265, 505, 779
FriOI GRGCYC 3 cut(s) 752, 875, 998
Fsp4HI GCNGC 2 cut(s) 191, 637
FspBI CTAG 2 cut(s) 413, 645
GluI GCNGC 2 cut(s) 191, 637
HaeIII GGCC 5 cut(s) 190, 354, 716, 839, 962
Hin1II CATG 6 cut(s) 106, 131, 317, 724, 847, 1028
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 3 cut(s) 741, 864, 987
HinfI GANTC 3 cut(s) 8, 296, 617
HpaI GTTAAC 1 cut(s) 240
HphI GGTGA 7 cut(s) 671, 749, 809, 872, 932, 995, 1055
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 6 cut(s) 172, 232, 314, 327, 902, 1025
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 109, 171, 255
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 3 cut(s) 127, 135, 770
HpyF3I CTNAG 1 cut(s) 762
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 6 cut(s) 106, 131, 317, 724, 847, 1028
Ksp22I TGATCA 1 cut(s) 598
KspAI GTTAAC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 646
LmnI GCTCC 5 cut(s) 285, 747, 870, 993, 1101
LpnPI CCDG 6 cut(s) 145, 157, 312, 387, 1057, 1085
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 1 cut(s) 757
MaeI CTAG 2 cut(s) 413, 645
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 464, 1001
MboII GAAGA 7 cut(s) 17, 62, 133, 511, 569, 577, 633
MfeI CAATTG 2 cut(s) 651, 1061
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 3 cut(s) 752, 875, 998
MluCI AATT 8 cut(s) 118, 305, 651, 757, 807, 881, 930, 1061
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 9 cut(s) 52, 179, 310, 385, 489, 694, 757, 817, 940
MseI TTAA 4 cut(s) 239, 810, 933, 1088
MspR9I CCNGG 1 cut(s) 1100
MunI CAATTG 2 cut(s) 651, 1061
MvaI CCWGG 1 cut(s) 1100
NlaIII CATG 6 cut(s) 106, 131, 317, 724, 847, 1028
NlaIV GGNNCC 7 cut(s) 64, 388, 439, 749, 872, 995, 1076
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PagI TCATGA 2 cut(s) 313, 1024
PciSI GCTCTTC 1 cut(s) 646
PfeI GAWTC 2 cut(s) 296, 617
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 2 cut(s) 192, 638
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 1098
PspGI CCWGG 1 cut(s) 1098
PspN4I GGNNCC 7 cut(s) 64, 388, 439, 749, 872, 995, 1076
PspPI GGNCC 3 cut(s) 188, 437, 1074
PstNI CAGNNNCTG 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 2 cut(s) 215, 280
RsaNI GTAC 2 cut(s) 214, 279
SapI GCTCTTC 1 cut(s) 646
SaqAI TTAA 4 cut(s) 239, 810, 933, 1088
SatI GCNGC 2 cut(s) 191, 637
Sau96I GGNCC 3 cut(s) 188, 437, 1074
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 1100
SduI GDGCHC 3 cut(s) 752, 875, 998
SetI ASST 7 cut(s) 231, 324, 463, 745, 868, 991, 1098
SfaNI GCATC 1 cut(s) 757
SinI GGWCC 2 cut(s) 437, 1074
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 131
Sse9I AATT 8 cut(s) 118, 305, 651, 757, 807, 881, 930, 1061
SsiI CCGC 2 cut(s) 191, 250
SspMI CTAG 2 cut(s) 413, 645
StyD4I CCNGG 1 cut(s) 1098
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 259, 432
TasI AATT 8 cut(s) 118, 305, 651, 757, 807, 881, 930, 1061
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 2 cut(s) 296, 617
Tru1I TTAA 4 cut(s) 239, 810, 933, 1088
Tru9I TTAA 4 cut(s) 239, 810, 933, 1088
TseI GCWGC 1 cut(s) 636
TspDTI ATGAA 7 cut(s) 63, 91, 208, 302, 330, 432, 602
TspGWI ACGGA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 437, 1074
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 131
XspI CTAG 2 cut(s) 413, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.