Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005733.1

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Reverse (-)

16117 .. 16960

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005733.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgagtagtggttcttcttcaaccaacttgaccagaaatggaagaagtccaagcgtattgaaagaagcacaaaggaaggaagatggaagtccatcgagggaacttgttctatgccgcttgaagaactatggaagtcatggcctggctcatgatatggtgataaccagtagtaacagtaaatcttcaacagattactcattattaaatagattgccagtcggcttcagattccaacccacagatgaggagttggtggattactacttgagaaacaagatgcatgacaatgatggcatagattcagaacaagttgattccatcatttcggaaattgatttctacgactacaagtatgaaccttgggaattaccagctaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

126

Amino Acids

14.33

Weight (kDa)

5.14

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	208
AgsI	TTSAA	4 cut(s)	21, 61, 121, 186
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
AoxI	GGCC	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	169
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BccI	CCATC	4 cut(s)	77, 100, 284, 326
BciT130I	CCWGG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	359
Bse1I	ACTGG	2 cut(s)	165, 215
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	165, 215
BseRI	GAGGAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	165, 215
BssECI	CCNNGG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	148
CviAII	CATG	3 cut(s)	137, 149, 281
CviJI	RGCY	4 cut(s)	141, 146, 222, 374
CviKI_1	RGCY	4 cut(s)	141, 146, 222, 374
Eco130I	CCWWGG	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	140, 152, 284
FaiI	YATR	8 cut(s)	112, 129, 138, 150, 155, 282, 296, 354
FatI	CATG	3 cut(s)	136, 148, 280
Fnu4HI	GCNGC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	140, 152, 284
HinfI	GANTC	3 cut(s)	228, 299, 314
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	227, 304, 328
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	140, 152, 284
LpnPI	CCDG	5 cut(s)	46, 128, 155, 178, 228
LweI	GCATC	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	6 cut(s)	6, 9, 54, 92, 133, 174
MluCI	AATT	2 cut(s)	330, 365
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	90, 238
Mph1103I	ATGCAT	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NlaIII	CATG	3 cut(s)	140, 152, 284
NsiI	ATGCAT	1 cut(s)	282
PagI	TCATGA	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	228, 299, 314
PkrI	GCNGC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	2 cut(s)	361, 376
SfaNI	GCATC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	330, 365
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	330, 365
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	228, 299, 314
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.