Prupe.8G095200_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000371
Physical Location & Seq
Reverse (-)
12759198 .. 12760058
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G095200.1

Sequence Viewer

Length: 861 bp
ATGGCACATCATCATAATGTGCCGTTAGGTTTCCGTTTCCACCCCACTGATCAAGAGATTGTGGGTTCCTTTCTCCATACTTTGTTGGTTCAGAGAAAGCCTTTGATGCCGCCGTACAGCAACTTCATCCGTGCCTGCGATCTCTTCGGCAAAAAGTTAGAGCCTTCGGAGATTTGGAACAAGTACGGAGGGCCTCAACTTGTCGATCAAGACTTGTATTTCCTTTCCGGGCTCAACAAGTTAACCACGAAGCGCATGGATCGCAGCATTGGCCACGGCGGTACCTGGAGTGAAACTGAATCCTTCAAACTCATTGAGGACGACAATGGAAATCCGAACCCCATTGGCCGAAAACGAAAATTCCGCTATGAGAATAAAGGGTCCGAGGAGCACACATGGTGGTTACTGGATGAATATAGTCTTTTTGTTGGTCCCAAGAATGACTACAATGATCGTAGTTATGATTTCGATTTCGTGATTTGCCGAATGAGGAAGAACGATAGGGCCTCGAGTAAGGAAATAAATTTAATTCGTTCATCACGAGATCAAGTACAAAAGAAGAGGAGCACAAATAAAAAGATGAAAAAAGATGATCAAATGGGATCAACTGAAGAATCATCATCACATGTACAACAAGGCTACTCTCCTAGTATAACTGGTGGTGAACTTGTGGTCTCTTATGATAATGTTGATCCGATTGATCAGACATTCTTCGAGGACAATCCTATCTTCAACATTGAACAAATACTTTGTGAAACCAAAGTGGAGGATGCTTGCAGCCCAAGTAACTCTGAGAATGTTGATAACAGCTACTCTAAATGGACTGAATCATATATGGAAGAGCTCATGGCTTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

287

Amino Acids

33.14

Weight (kDa)

5.56

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 3 cut(s) 110, 279, 364
AclWI GGATC 3 cut(s) 267, 610, 686
AcoI YGGCCR 2 cut(s) 271, 346
AcsI RAATTY 2 cut(s) 359, 523
AcuI CTGAAG 1 cut(s) 630
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 5 cut(s) 116, 185, 283, 552, 630
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 3 cut(s) 307, 733, 740
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 810, 844
AluI AGCT 2 cut(s) 810, 844
Alw21I GWGCWC 3 cut(s) 393, 569, 846
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 267, 610, 686
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 4 cut(s) 191, 271, 346, 504
ApeKI GCWGC 2 cut(s) 264, 777
ApoI RAATTY 2 cut(s) 359, 523
Asp718I GGTACC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 4 cut(s) 191, 381, 431, 504
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 2 cut(s) 381, 431
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 234, 846
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BauI CACGAG 1 cut(s) 540
Bbv12I GWGCWC 3 cut(s) 393, 569, 846
BbvI GCAGC 2 cut(s) 276, 789
BceAI ACGGC 3 cut(s) 7, 97, 292
BciT130I CCWGG 1 cut(s) 286
BclI TGATCA 3 cut(s) 49, 592, 700
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 2 cut(s) 648, 859
BisI GCNGC 3 cut(s) 110, 265, 778
BlsI GCNGC 3 cut(s) 111, 266, 779
Bme1390I CCNGG 2 cut(s) 229, 286
Bme18I GGWCC 2 cut(s) 381, 431
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 4 cut(s) 191, 381, 431, 504
BmiI GGNNCC 4 cut(s) 67, 283, 382, 433
BmrFI CCNGG 2 cut(s) 229, 286
BmsI GCATC 2 cut(s) 96, 760
BpmI CTGGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 274, 384
Bse1I ACTGG 2 cut(s) 411, 661
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 274, 384
BseGI GGATG 3 cut(s) 126, 415, 775
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 2 cut(s) 411, 661
BseRI GAGGAG 2 cut(s) 401, 577
BseXI GCAGC 2 cut(s) 276, 789
BshFI GGCC 4 cut(s) 193, 273, 348, 506
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 3 cut(s) 393, 569, 846
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 4 cut(s) 193, 273, 348, 506
Bso31I GGTCTC 1 cut(s) 679
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 4 cut(s) 234, 393, 569, 846
Bsp1407I TGTACA 1 cut(s) 628
BspACI CCGC 3 cut(s) 110, 279, 364
BspANI GGCC 4 cut(s) 193, 273, 348, 506
BspCNI CTCAG 1 cut(s) 784
BspLI GGNNCC 4 cut(s) 67, 283, 382, 433
BspPI GGATC 3 cut(s) 267, 610, 686
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 2 cut(s) 411, 661
BssECI CCNNGG 2 cut(s) 274, 384
BssSI CACGAG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 149, 554, 834
BstAUI TGTACA 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 136, 775
BstDEI CTNAG 1 cut(s) 792
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 3 cut(s) 126, 415, 775
BstHHI GCGC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 679
BstMWI GCNNNNNNNGC 3 cut(s) 106, 261, 270
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 2 cut(s) 227, 284
BstV1I GCAGC 2 cut(s) 276, 789
BsuRI GGCC 4 cut(s) 193, 273, 348, 506
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 3 cut(s) 126, 415, 775
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 136, 775
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 4 cut(s) 191, 381, 431, 504
Csp6I GTAC 5 cut(s) 115, 184, 282, 551, 629
CviAII CATG 4 cut(s) 256, 396, 626, 847
CviQI GTAC 5 cut(s) 115, 184, 282, 551, 629
DdeI CTNAG 1 cut(s) 792
DraIII CACNNNGTG 1 cut(s) 399
EaeI YGGCCR 2 cut(s) 271, 346
Eam1104I CTCTTC 3 cut(s) 149, 554, 834
EarI CTCTTC 3 cut(s) 149, 554, 834
Ecl136II GAGCTC 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 234, 846
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 381, 431
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 844
EcoO109I RGGNCCY 2 cut(s) 191, 504
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 2 cut(s) 234, 846
FaeI CATG 4 cut(s) 259, 399, 629, 850
FaqI GGGAC 1 cut(s) 417
FatI CATG 4 cut(s) 255, 395, 625, 846
FbaI TGATCA 3 cut(s) 49, 592, 700
Fnu4HI GCNGC 3 cut(s) 110, 265, 778
FokI GGATG 3 cut(s) 113, 422, 782
FriOI GRGCYC 2 cut(s) 234, 846
Fsp4HI GCNGC 3 cut(s) 110, 265, 778
FspBI CTAG 2 cut(s) 648, 859
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 110, 265, 778
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 4 cut(s) 193, 273, 348, 506
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 255
Hin1II CATG 4 cut(s) 259, 399, 629, 850
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 299, 614, 827
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 2 cut(s) 243, 665
Hpy188I TCNGA 7 cut(s) 93, 169, 336, 385, 696, 705, 793
Hpy188III TCNNGA 4 cut(s) 53, 209, 475, 540
Hpy8I GTNNAC 2 cut(s) 243, 665
HpyAV CCTTC 2 cut(s) 174, 313
HpyCH4V TGCA 1 cut(s) 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 261, 270
HpyF3I CTNAG 1 cut(s) 792
Hsp92II CATG 4 cut(s) 259, 399, 629, 850
HspAI GCGC 1 cut(s) 253
KpnI GGTACC 1 cut(s) 285
Ksp22I TGATCA 3 cut(s) 49, 592, 700
KspAI GTTAAC 1 cut(s) 243
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 388, 564
LpnPI CCDG 6 cut(s) 148, 241, 271, 298, 392, 642
Lsp1109I GCAGC 2 cut(s) 276, 789
LweI GCATC 2 cut(s) 96, 760
MaeI CTAG 2 cut(s) 648, 859
MaeIII GTNAC 2 cut(s) 402, 785
MboII GAAGA 7 cut(s) 136, 505, 571, 623, 703, 721, 851
MhlI GDGCHC 4 cut(s) 234, 393, 569, 846
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 3 cut(s) 359, 523, 528
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 9 cut(s) 182, 204, 310, 379, 483, 517, 555, 709, 760
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MseI TTAA 2 cut(s) 242, 527
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 229, 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 106, 261, 270
NciI CCSGG 1 cut(s) 229
NlaIII CATG 4 cut(s) 259, 399, 629, 850
NlaIV GGNNCC 4 cut(s) 67, 283, 382, 433
NspI RCATGY 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 508
PciI ACATGT 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 1 cut(s) 538
PfeI GAWTC 3 cut(s) 299, 614, 827
PkrI GCNGC 3 cut(s) 111, 266, 779
PscI ACATGT 1 cut(s) 625
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 4 cut(s) 67, 283, 382, 433
PspPI GGNCC 4 cut(s) 191, 381, 431, 504
PspXI VCTCGAGB 1 cut(s) 508
RsaI GTAC 5 cut(s) 116, 185, 283, 552, 630
RsaNI GTAC 5 cut(s) 115, 184, 282, 551, 629
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 846
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 2 cut(s) 242, 527
SatI GCNGC 3 cut(s) 110, 265, 778
Sau96I GGNCC 4 cut(s) 191, 381, 431, 504
ScrFI CCNGG 2 cut(s) 229, 286
SduI GDGCHC 4 cut(s) 234, 393, 569, 846
SetI ASST 4 cut(s) 31, 287, 812, 846
SfaNI GCATC 2 cut(s) 96, 760
Sfr274I CTCGAG 1 cut(s) 508
SinI GGWCC 2 cut(s) 381, 431
SlaI CTCGAG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 3 cut(s) 359, 523, 528
SsiI CCGC 3 cut(s) 110, 279, 364
SspMI CTAG 2 cut(s) 648, 859
SstI GAGCTC 1 cut(s) 846
StyD4I CCNGG 2 cut(s) 227, 284
TaqI TCGA 4 cut(s) 204, 468, 509, 714
TasI AATT 3 cut(s) 359, 523, 528
TatI WGTACW 2 cut(s) 550, 628
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 3 cut(s) 299, 614, 827
Tru1I TTAA 2 cut(s) 242, 527
Tru9I TTAA 2 cut(s) 242, 527
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 264, 777
TspDTI ATGAA 4 cut(s) 115, 426, 525, 596
TspGWI ACGGA 3 cut(s) 23, 119, 201
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 381, 431
XapI RAATTY 2 cut(s) 359, 523
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 508
XspI CTAG 2 cut(s) 648, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.