Rh7DG438400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000371
Physical Location & Seq
Reverse (-)
62381070 .. 62381786
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG438400.1

Sequence Viewer

Length: 717 bp
ATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTGCTCATGATCAGGAATATGAGACTCAGCATTTGATGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGGTAGTAGAAGGGGATACACTAGCCCCTACCCTCTCAGAACAACACACATGTTCATCATTAATTGTGCAGCCCAGTCCTACCAAAGAAGATACATATACAGTACCTCATATTGGTTCAGACTTACACCAACTAGGAGACCAAAATGAGTTGATTACTAGTGAGGCACAAAGCAGTACAAGTATTGGTATTGGCATGTCTGAGGATACTGACTGGCTTGATCTTGCATTAGAAGAAGTAGAAAGGGAGACAATATCCCCTTCACCCTCAGAACAACAAATGTCATTGACTTCACATATGCTGGCCAATCCTTCCAAAGAAAATACATATAAAGTACCACTTGTACCTCATATTGGTTCAAAATGGCAACAACCAACAAATCAAAATGGGTTGGTTGAGGCACAAGGCAGTAGTGAAGATAATGAATTTAGTTTTGCCTTTGATGATATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTTAGCAACTACAACTTTGGAGATGAGTTCTTGTTGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCCTGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.45

Weight (kDa)

4.05

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 2 cut(s) 545, 608
AfaI GTAC 5 cut(s) 91, 225, 298, 456, 465
AfiI CCNNNNNNNGG 2 cut(s) 233, 473
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 480
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 3 cut(s) 16, 668, 703
AluI AGCT 3 cut(s) 16, 668, 703
Alw26I GTCTC 3 cut(s) 59, 252, 362
AlwI GGATC 1 cut(s) 591
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 190, 703
ApoI RAATTY 2 cut(s) 545, 608
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AseI ATTAAT 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 375
BalI TGGCCA 1 cut(s) 425
BbvI GCAGC 2 cut(s) 202, 690
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 2 cut(s) 130, 319
BclI TGATCA 2 cut(s) 34, 52
BcoDI GTCTC 3 cut(s) 59, 252, 362
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 3 cut(s) 143, 254, 279
BfuI GTATCC 2 cut(s) 130, 319
BisI GCNGC 2 cut(s) 191, 704
BlsI GCNGC 2 cut(s) 192, 705
Bme1390I CCNGG 1 cut(s) 708
BmrFI CCNGG 1 cut(s) 708
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 473
Bse1I ACTGG 2 cut(s) 195, 338
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 660
BseGI GGATG 1 cut(s) 658
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 233, 473
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 4 cut(s) 83, 171, 312, 402
BseNI ACTGG 2 cut(s) 195, 338
BseXI GCAGC 2 cut(s) 202, 690
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 660
BslI CCNNNNNNNGG 2 cut(s) 233, 473
BsmAI GTCTC 3 cut(s) 59, 252, 362
BsnI GGCC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 34, 52, 340, 583
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 4 cut(s) 82, 170, 313, 401
BspDI ATCGAT 1 cut(s) 660
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 2 cut(s) 195, 338
BssMI GATC 4 cut(s) 34, 52, 340, 583
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 69, 157, 321, 388
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 4 cut(s) 37, 55, 343, 586
BstMAI GTCTC 3 cut(s) 59, 252, 362
BstMBI GATC 4 cut(s) 34, 52, 340, 583
BstNI CCWGG 1 cut(s) 708
BstNSI RCATGY 2 cut(s) 174, 319
BstSCI CCNGG 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 202, 690
Bsu15I ATCGAT 1 cut(s) 660
BsuI GTATCC 2 cut(s) 130, 319
BsuRI GGCC 1 cut(s) 425
BsuTUI ATCGAT 1 cut(s) 660
BtsCI GGATG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 423
CciI TCATGA 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 660
Csp6I GTAC 5 cut(s) 90, 224, 297, 455, 464
CviAII CATG 4 cut(s) 50, 171, 316, 587
CviJI RGCY 7 cut(s) 16, 146, 193, 337, 425, 668, 703
CviKI_1 RGCY 7 cut(s) 16, 146, 193, 337, 425, 668, 703
CviQI GTAC 5 cut(s) 90, 224, 297, 455, 464
DdeI CTNAG 4 cut(s) 69, 157, 321, 388
DpnI GATC 4 cut(s) 36, 54, 342, 585
DpnII GATC 4 cut(s) 34, 52, 340, 583
EaeI YGGCCR 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 706
EcoRV GATATC 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 4 cut(s) 53, 174, 319, 590
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 4 cut(s) 49, 170, 315, 586
FauNDI CATATG 1 cut(s) 417
FbaI TGATCA 2 cut(s) 34, 52
Fnu4HI GCNGC 2 cut(s) 191, 704
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 2 cut(s) 191, 704
FspBI CTAG 3 cut(s) 143, 254, 279
GluI GCNGC 2 cut(s) 191, 704
HaeIII GGCC 1 cut(s) 425
Hin1II CATG 4 cut(s) 53, 174, 319, 590
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 375
Hpy188I TCNGA 6 cut(s) 39, 160, 241, 322, 391, 604
Hpy188III TCNNGA 2 cut(s) 50, 56
HpyAV CCTTC 4 cut(s) 125, 390, 441, 641
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 116, 190, 347
HpyF3I CTNAG 4 cut(s) 69, 157, 321, 388
Hsp92II CATG 4 cut(s) 53, 174, 319, 590
Ksp22I TGATCA 2 cut(s) 34, 52
Kzo9I GATC 4 cut(s) 34, 52, 340, 583
LpnPI CCDG 5 cut(s) 41, 208, 319, 407, 693
Lsp1109I GCAGC 2 cut(s) 202, 690
MaeI CTAG 3 cut(s) 143, 254, 279
MalI GATC 4 cut(s) 36, 54, 342, 585
MboI GATC 4 cut(s) 34, 52, 340, 583
MboII GAAGA 3 cut(s) 221, 365, 548
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 3 cut(s) 183, 545, 608
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 79, 115, 164, 237, 277, 316, 397, 477, 511
Mox20I TGGCCA 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 1 cut(s) 425
MseI TTAA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 2 cut(s) 668, 703
MspR9I CCNGG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 417
NdeII GATC 4 cut(s) 34, 52, 340, 583
NlaIII CATG 4 cut(s) 53, 174, 319, 590
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 2 cut(s) 174, 319
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 170
PkrI GCNGC 2 cut(s) 192, 705
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PscI ACATGT 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PvuII CAGCTG 2 cut(s) 668, 703
RsaI GTAC 5 cut(s) 91, 225, 298, 456, 465
RsaNI GTAC 5 cut(s) 90, 224, 297, 455, 464
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 191, 704
Sau3AI GATC 4 cut(s) 34, 52, 340, 583
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 708
SetI ASST 6 cut(s) 18, 126, 229, 469, 670, 705
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 3 cut(s) 183, 545, 608
SspMI CTAG 3 cut(s) 143, 254, 279
StyD4I CCNGG 1 cut(s) 706
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 660
TasI AATT 3 cut(s) 183, 545, 608
TatI WGTACW 1 cut(s) 296
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 2 cut(s) 190, 703
TspDTI ATGAA 3 cut(s) 165, 558, 621
VspI ATTAAT 1 cut(s) 182
XapI RAATTY 2 cut(s) 545, 608
XceI RCATGY 2 cut(s) 174, 319
XspI CTAG 3 cut(s) 143, 254, 279
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.