Rmu_sc0003747.1_g000001

Ribosomal protein S14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003747.1
OG0000371
Physical Location & Seq
Forward (+)
6323 .. 6735
413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003747.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atggatcattgtgttccgatgggtgtgagattccatccgactgatgaagaattgatcgaacactacctctacctcaagaataatcctaactcggatccaaatccgatcctagggaatttggaggtgaattttagctttgcgggaggagaatcggtacaagctctcgaagcttcctcgaagatcttctctggccgaggccgcgccgtctacaagaccttccatatgtcctgtattgtcttctgcgctctcgcctctaaaggcatgctcaacggcatcaagaaagtctcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

96

Amino Acids

10.58

Weight (kDa)

6.89

Isoelectric Point (pI)

25.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 140, 199
AclWI GGATC 4 cut(s) 12, 89, 100, 102
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 115, 127
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 110
AluBI AGCT 3 cut(s) 135, 161, 170
AluI AGCT 3 cut(s) 135, 161, 170
AlwI GGATC 4 cut(s) 12, 89, 100, 102
AoxI GGCC 2 cut(s) 190, 196
ApoI RAATTY 2 cut(s) 115, 127
Asp700I GAANNNNTTC 1 cut(s) 182
AspA2I CCTAGG 1 cut(s) 109
AspLEI GCGC 2 cut(s) 203, 245
AsuHPI GGTGA 1 cut(s) 136
AvrII CCTAGG 1 cut(s) 109
BamHI GGATCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 229
BccI CCATC 2 cut(s) 13, 42
BceAI ACGGC 2 cut(s) 188, 286
BfaI CTAG 2 cut(s) 110, 289
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 199
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 109, 193
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 109, 193
BseGI GGATG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 192, 198
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 2 cut(s) 192, 198
Bsp143I GATC 5 cut(s) 4, 54, 94, 105, 180
BspACI CCGC 2 cut(s) 140, 199
BspANI GGCC 2 cut(s) 192, 198
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 4 cut(s) 12, 89, 100, 102
BssECI CCNNGG 2 cut(s) 109, 193
BssMI GATC 5 cut(s) 4, 54, 94, 105, 180
BssT1I CCWWGG 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 2 cut(s) 203, 245
BstKTI GATC 5 cut(s) 7, 57, 97, 108, 183
BstMBI GATC 5 cut(s) 4, 54, 94, 105, 180
BstMWI GCNNNNNNNGC 2 cut(s) 167, 198
BstNSI RCATGY 1 cut(s) 265
BstUI CGCG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 94, 180
BstYI RGATCY 2 cut(s) 94, 180
BsuRI GGCC 2 cut(s) 192, 198
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 2 cut(s) 203, 245
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 135, 161, 170, 192, 198
CviKI_1 RGCY 5 cut(s) 135, 161, 170, 192, 198
CviQI GTAC 1 cut(s) 155
DpnI GATC 5 cut(s) 6, 56, 96, 107, 182
DpnII GATC 5 cut(s) 4, 54, 94, 105, 180
EaeI YGGCCR 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 222, 224, 263
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 2 cut(s) 110, 289
GlaI GCGC 2 cut(s) 202, 244
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 2 cut(s) 192, 198
HhaI GCGC 2 cut(s) 203, 245
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 2 cut(s) 201, 243
HinP1I GCGC 2 cut(s) 201, 243
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 2 cut(s) 30, 149
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 4 cut(s) 18, 39, 94, 105
Hpy188III TCNNGA 3 cut(s) 76, 164, 277
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 198
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 2 cut(s) 201, 243
Kzo9I GATC 5 cut(s) 4, 54, 94, 105, 180
LpnPI CCDG 2 cut(s) 174, 241
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 110, 289
MalI GATC 5 cut(s) 6, 56, 96, 107, 182
MboI GATC 5 cut(s) 4, 54, 94, 105, 180
MboII GAAGA 4 cut(s) 59, 175, 190, 229
MflI RGATCY 2 cut(s) 94, 180
MluCI AATT 3 cut(s) 50, 115, 127
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 7 cut(s) 77, 83, 115, 137, 184, 188, 262
MroXI GAANNNNTTC 1 cut(s) 182
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 167, 198
NdeI CATATG 1 cut(s) 222
NdeII GATC 5 cut(s) 4, 54, 94, 105, 180
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 218
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 30, 149
PkrI GCNGC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 96
PsuI RGATCY 2 cut(s) 94, 180
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 5 cut(s) 4, 54, 94, 105, 180
SetI ASST 7 cut(s) 69, 75, 126, 137, 163, 172, 218
SfaNI GCATC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 265
Sse9I AATT 3 cut(s) 50, 115, 127
SsiI CCGC 2 cut(s) 140, 199
SspMI CTAG 2 cut(s) 110, 289
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 3 cut(s) 57, 165, 176
TasI AATT 3 cut(s) 50, 115, 127
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 30, 149
TspDTI ATGAA 1 cut(s) 60
XapI RAATTY 2 cut(s) 115, 127
XceI RCATGY 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 110, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.