Rh2AG321800
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000371
Physical Location & Seq
Reverse (-)
46182841 .. 46183386
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG321800.1

Sequence Viewer

Length: 546 bp
ATGTATGGGGGACATGAGTTGTGCAACCAAAACTTGTTCTTTTTCACAAAGCTCAAGAAGGCGAGCCTCAACGGCTCACGCATTCTCCGCAAGATTGGATCAAGTGGGACTTGGAGTGAAACAGATGCCTCCAAATTGATTAAAGATGAGGAATTGCAAAAACATATTGGGCGGAGGAGGAAACTGCGATACGAGAGCAAATGTTCCAAACACCACGGTCATTGGTATTTGGATGAGTATAGTCTTCTAGATGCTAAATCAGATTATGTGATTTGTAGACTGCGAAAGAACAACAAATCACCACTGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGCATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTGCTTTCTGTTACTAACAAAAGGCTAATGCGAAAGCAAAGTAATGTGATGATGAATATAACCAACAACAAGAACAACTTGTCTGACCAGCCAATAGAACAGACAAAGAGGACGGAACCTTGCACAAAATTCAAATTATTTGGTGTAGAGATAGGTTCTAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

181

Amino Acids

21.15

Weight (kDa)

9.86

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 82 1.5e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 2 cut(s) 88, 172
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 1 cut(s) 511
AluBI AGCT 2 cut(s) 52, 379
AluI AGCT 2 cut(s) 52, 379
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 88
BfaI CTAG 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 2 cut(s) 115, 241
BpiI GAAGAC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 366
BslFI GGGAC 2 cut(s) 24, 121
BsmFI GGGAC 2 cut(s) 24, 121
BsmI GAATGC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 2 cut(s) 88, 172
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 218, 344
BstAPI GCANNNNNTGC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 72, 87, 379
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 2 cut(s) 302, 349
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 379
Csp6I GTAC 1 cut(s) 340
CspCI CAANNNNNGTGG 4 cut(s) 203, 238, 291, 326
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 52, 66, 75, 379, 403, 469
CviKI_1 RGCY 6 cut(s) 52, 66, 75, 379, 403, 469
CviQI GTAC 1 cut(s) 340
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 187
FaeI CATG 1 cut(s) 17
FaiI YATR 7 cut(s) 6, 15, 165, 240, 267, 352, 437
FalI AAGNNNNNCTT 4 cut(s) 94, 126, 440, 472
FaqI GGGAC 2 cut(s) 24, 121
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 380
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 262, 316, 463
Hpy188III TCNNGA 2 cut(s) 55, 248
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 218, 344
HpyCH4V TGCA 4 cut(s) 24, 157, 347, 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 87, 379
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 1 cut(s) 479
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 2 cut(s) 115, 241
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 236
MluCI AATT 4 cut(s) 134, 152, 506, 512
MnlI CCTC 6 cut(s) 77, 139, 142, 168, 171, 480
MseI TTAA 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 72, 87, 379
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 495
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 98
SetI ASST 4 cut(s) 54, 381, 499, 535
SfaNI GCATC 2 cut(s) 115, 241
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 134, 152, 506, 512
SsiI CCGC 2 cut(s) 88, 172
SspMI CTAG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 218, 344
TasI AATT 4 cut(s) 134, 152, 506, 512
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 2 cut(s) 309, 349
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 309, 349
XapI RAATTY 1 cut(s) 506
XbaI TCTAGA 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.