pycom03g04400
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000371
Physical Location & Seq
Reverse (-)
3424031 .. 3425201
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04400.2

Sequence Viewer

Length: 1002 bp
ATGGAGAATAATTCCCTTGTGCCATTCGGCTTCCGCTTCAAACCCACCGATCAAGAGCTCGTGGGCCACTTTCTCTACAACTTTTTGGAGAACATACCGCTAATGTCGCTGTACAACACCCTAATACATATGTGCAACATCTTCGGCAACAAATCAGAACCCTCAGAGATTTGGGAAGCCTATGGAGGAACTCAACTTGCTGATGATCAACCAGCCTTGTATTTCTTCTCCGAGCTCAAGAGGCTAAACCCTAAGGGTACCAAGATCGATCGCAAGATGGGACGTGGAGGTACTTGGACTGGAAAAGCAGCCACCGTACGGGTTGAGGGGATAGTTGATGGGAGGCCTACCGACATCGGACTAAAAAGAACATTTCGGTACGAGAACGAAGGTTCGGAGGACCACAAGAGGTGGCTGTTAGATGAATATAGTCATTTTGCTGGTCCTAGGAATAACAAGAGTAATTTTAGCTACGATTTTAATGTTGCACTTTGTCGGTTGAGGAAGAAGGAAGGGTCCAGAATTAACAAAAGAAAGTGTTCGACTTCATCATTATCAAAGGATCAACTGCCGAATTCGAAGAAGCAGCGCAATGATGTTGTTTATGATCATGATCTCCTTGATGAAACACTCACCGTCGATGAATTATTGCCTGTGCTAGAAGCTTCCGGGATCGTTTCTGGTGAAGCAGTAGAAGAGCAAGCTTTGAATCCAATTATGTTAGAGGAGTTTACTCCTGAAACCCAAGAACTGCCTCTGCCAGCAGCTTCTGTAGTTGCTGCAGAAGGAGCCGTAGGACAGAAAGCTTGGGATCCAAGTTTGTTAGACGAATATTGGCTTGCTGAAACCCAACAAGAGCCTTTTCCGACTACGACTGGAATGTTTCCTTATTTAGAGGAAGCTTGCAATCCAAGTACCTTTGAGAACGTGGTCGACCAATCATTATTGGACATCAACTATTGGAATAATTCGTTTATGGATGATCAGTTCATGTCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

334

Amino Acids

37.84

Weight (kDa)

4.76

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 933
AciI CCGC 2 cut(s) 34, 98
AclWI GGATC 4 cut(s) 570, 680, 806, 819
AcsI RAATTY 1 cut(s) 574
AfaI GTAC 6 cut(s) 113, 259, 292, 318, 380, 916
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 2 cut(s) 40, 709
AjiI CACGTC 1 cut(s) 284
AloI GAACNNNNNNTCC 1 cut(s) 971
AluBI AGCT 8 cut(s) 58, 235, 471, 665, 704, 767, 806, 902
AluI AGCT 8 cut(s) 58, 235, 471, 665, 704, 767, 806, 902
Alw21I GWGCWC 2 cut(s) 60, 237
AlwI GGATC 4 cut(s) 570, 680, 806, 819
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 2 cut(s) 64, 344
ApeKI GCWGC 4 cut(s) 308, 586, 764, 779
ApoI RAATTY 1 cut(s) 574
Asp700I GAANNNNTTC 1 cut(s) 538
Asp718I GGTACC 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 446
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 4 cut(s) 64, 400, 443, 516
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 3 cut(s) 625, 695, 987
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 3 cut(s) 400, 443, 516
AvrII CCTAGG 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 252
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 2 cut(s) 60, 237
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 60, 237
BbvI GCAGC 4 cut(s) 320, 598, 766, 776
BccI CCATC 2 cut(s) 271, 332
BceAI ACGGC 1 cut(s) 776
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BclI TGATCA 3 cut(s) 205, 607, 982
BcnI CCSGG 1 cut(s) 670
BfaI CTAG 2 cut(s) 447, 659
BfmI CTRYAG 2 cut(s) 771, 780
BisI GCNGC 4 cut(s) 309, 587, 765, 780
BlnI CCTAGG 1 cut(s) 446
BlsI GCNGC 4 cut(s) 310, 588, 766, 781
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 3 cut(s) 400, 443, 516
BmgBI CACGTC 1 cut(s) 284
BmgT120I GGNCC 4 cut(s) 64, 400, 443, 516
BmiI GGNNCC 4 cut(s) 259, 517, 790, 813
BmrFI CCNGG 1 cut(s) 670
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 670
Bsa29I ATCGAT 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 2 cut(s) 304, 880
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 985
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 304, 880
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 4 cut(s) 320, 598, 766, 776
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 66, 346
BshNI GGYRCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 60, 237
BsiSI CCGG 1 cut(s) 669
BsiWI CGTACG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 2 cut(s) 66, 346
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 60, 237
Bsp1407I TGTACA 1 cut(s) 111
BspACI CCGC 2 cut(s) 34, 98
BspANI GGCC 2 cut(s) 66, 346
BspCNI CTCAG 1 cut(s) 176
BspDI ATCGAT 1 cut(s) 267
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 4 cut(s) 259, 517, 790, 813
BspMAI CTGCAG 1 cut(s) 784
BspPI GGATC 4 cut(s) 570, 680, 806, 819
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 598
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 304, 880
BssECI CCNNGG 1 cut(s) 446
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 316, 637
Bst6I CTCTTC 1 cut(s) 690
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 4 cut(s) 702, 762, 840, 904
BstDEI CTNAG 2 cut(s) 163, 252
BstF5I GGATG 1 cut(s) 985
BstHHI GCGC 1 cut(s) 591
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 106, 241, 788
BstSCI CCNGG 1 cut(s) 668
BstSFI CTRYAG 2 cut(s) 771, 780
BstV1I GCAGC 4 cut(s) 320, 598, 766, 776
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu15I ATCGAT 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 66, 346
BsuTUI ATCGAT 1 cut(s) 267
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 985
Cac8I GCNNGC 4 cut(s) 702, 762, 840, 904
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 4 cut(s) 64, 400, 443, 516
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 6 cut(s) 112, 258, 291, 317, 379, 915
CviAII CATG 2 cut(s) 611, 991
CviQI GTAC 6 cut(s) 112, 258, 291, 317, 379, 915
DdeI CTNAG 2 cut(s) 163, 252
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Ecl136II GAGCTC 2 cut(s) 58, 235
Eco130I CCWWGG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 2 cut(s) 60, 237
Eco47I GGWCC 3 cut(s) 400, 443, 516
Eco53kI GAGCTC 2 cut(s) 58, 235
Eco81I CCTNAGG 1 cut(s) 252
EcoICRI GAGCTC 2 cut(s) 58, 235
EcoRI GAATTC 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 2 cut(s) 60, 237
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 2 cut(s) 614, 994
FaqI GGGAC 1 cut(s) 294
FatI CATG 2 cut(s) 610, 990
FauNDI CATATG 1 cut(s) 129
FbaI TGATCA 3 cut(s) 205, 607, 982
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 4 cut(s) 309, 587, 765, 780
FokI GGATG 1 cut(s) 992
FriOI GRGCYC 2 cut(s) 60, 237
Fsp4HI GCNGC 4 cut(s) 309, 587, 765, 780
FspBI CTAG 2 cut(s) 447, 659
GlaI GCGC 1 cut(s) 590
GluI GCNGC 4 cut(s) 309, 587, 765, 780
HaeIII GGCC 2 cut(s) 66, 346
HapII CCGG 1 cut(s) 669
HhaI GCGC 1 cut(s) 591
Hin1II CATG 2 cut(s) 614, 994
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HindIII AAGCTT 4 cut(s) 663, 702, 804, 900
HinfI GANTC 1 cut(s) 709
HpaII CCGG 1 cut(s) 669
HphI GGTGA 3 cut(s) 625, 695, 987
Hpy166II GTNNAC 2 cut(s) 732, 934
Hpy188I TCNGA 6 cut(s) 157, 166, 232, 359, 397, 867
Hpy188III TCNNGA 5 cut(s) 53, 238, 519, 611, 737
Hpy8I GTNNAC 2 cut(s) 732, 934
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 4 cut(s) 383, 502, 506, 779
HpyCH4III ACNGT 2 cut(s) 316, 637
HpyCH4IV ACGT 2 cut(s) 283, 927
HpyCH4V TGCA 4 cut(s) 135, 488, 782, 906
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 241, 788
HpyF3I CTNAG 2 cut(s) 163, 252
HpySE526I ACGT 2 cut(s) 283, 927
Hsp92II CATG 2 cut(s) 614, 994
HspAI GCGC 1 cut(s) 589
KpnI GGTACC 1 cut(s) 261
Ksp22I TGATCA 3 cut(s) 205, 607, 982
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 4 cut(s) 320, 598, 766, 776
MaeI CTAG 2 cut(s) 447, 659
MaeII ACGT 2 cut(s) 283, 927
MaeIII GTNAC 1 cut(s) 993
MboII GAAGA 5 cut(s) 133, 217, 517, 592, 707
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 60, 237
MluCI AATT 7 cut(s) 10, 463, 522, 574, 644, 714, 967
MmeI TCCRAC 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 2 cut(s) 480, 525
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 1 cut(s) 670
MwoI GCNNNNNNNGC 3 cut(s) 106, 241, 788
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 129
NlaIII CATG 2 cut(s) 614, 994
NlaIV GGNNCC 4 cut(s) 259, 517, 790, 813
NmuCI GTSAC 1 cut(s) 993
NspV TTCGAA 1 cut(s) 578
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 709
Pfl23II CGTACG 1 cut(s) 316
PfoI TCCNGGA 1 cut(s) 668
PkrI GCNGC 4 cut(s) 310, 588, 766, 781
Ple19I CGATCG 1 cut(s) 271
Psp124BI GAGCTC 2 cut(s) 60, 237
PspLI CGTACG 1 cut(s) 316
PspN4I GGNNCC 4 cut(s) 259, 517, 790, 813
PspPI GGNCC 4 cut(s) 64, 400, 443, 516
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 811
PvuI CGATCG 1 cut(s) 271
RsaI GTAC 6 cut(s) 113, 259, 292, 318, 380, 916
RsaNI GTAC 6 cut(s) 112, 258, 291, 317, 379, 915
SacI GAGCTC 2 cut(s) 60, 237
SalI GTCGAC 1 cut(s) 932
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 480, 525
SatI GCNGC 4 cut(s) 309, 587, 765, 780
Sau96I GGNCC 4 cut(s) 64, 400, 443, 516
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 2 cut(s) 60, 237
SfcI CTRYAG 2 cut(s) 771, 780
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 3 cut(s) 400, 443, 516
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 7 cut(s) 10, 463, 522, 574, 644, 714, 967
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 2 cut(s) 34, 98
SspI AATATT 1 cut(s) 833
SspMI CTAG 2 cut(s) 447, 659
SstI GAGCTC 2 cut(s) 60, 237
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 316, 637
TaiI ACGT 2 cut(s) 286, 930
TaqI TCGA 5 cut(s) 267, 542, 578, 639, 933
TasI AATT 7 cut(s) 10, 463, 522, 574, 644, 714, 967
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 709
Tru1I TTAA 2 cut(s) 480, 525
Tru9I TTAA 2 cut(s) 480, 525
TseFI GTSAC 1 cut(s) 993
TseI GCWGC 4 cut(s) 308, 586, 764, 779
Tsp45I GTSAC 1 cut(s) 993
TspDTI ATGAA 5 cut(s) 438, 537, 639, 657, 979
VpaK11BI GGWCC 3 cut(s) 400, 443, 516
XapI RAATTY 1 cut(s) 574
XmaJI CCTAGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 2 cut(s) 447, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.