FvH4_6g26330
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000371
Physical Location & Seq
Reverse (-)
20135952 .. 20137202
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26330.t1

Sequence Viewer

Length: 1251 bp
ATGTCTTCTGATCTGGTGGGTTTCAGGTTCTACCCAACTGATGAAGAACTGATCAGTTATTTCCTCGACAACAAGAACAATGTCCACACAACTGCACAAGTGCCATCAATGGCTACATTCAATTACAACAATATTATGCCTGAGGTTGACCTGTATGGTGATGTAGAACCATGGCAGATTTGGGAAACGTATGGGGGATCCGAACTGTACGACCAAGATATGCTCTTCTTTACACAGCACAAGATGGTAAACCCGGATGGTTTACGCATTCAGCGCAAGGTTGGATCTGGTGGAACTTGGAGTGAAGGTGAACCAGGCAAACTTATATTCGATTCAAAGCTTATGCAGAAACCTATTGGACAAAAGAGGAAATTTCGATATGAGAAAAAAGGGTCTGAACACAATGGTTGTTGGTATTTGGAAGAGTATAGTCTTCTTTCAATGAATTCTGCAAGTTATGTGCTTTGTCGACTCCGACAGAACATCAGGAAAGGAAGGAAGAGAAAGGAGATATCATTGAGGCAAGAGTCGCCAATGAATTATGCACCCGTGGGTTTCAGGTTCCACCCGACTGATCAACAGTTGATCAGTTACTTCCTCCACAAGAAGGTGACTGAGGAAGCATCATTATACAGTTACAAAAACATTGTGTGCGAGTTTGATCTTTTTGGAAGCACGGAACCTTGGGAGATCTGGAACATGTATGGGGGGCATGAGTTGCGCAACCAAGACTTGTTCTTTTTCACAAAGCTCAAGAGGGCGAGCCTCAAGAGTTCACGCATTCTCCGCAAGATTGGATCGAGTGGGACTTGGAGCGAAACAGATGCCTCCAAATTGATTAAAGATGAGGCAAAGCAAAAACATATCGGGCGAAGGAGGAAATTGCGATACGAGAGCAAATGTTCCAAGCAACATGGTCATTGGTATCTAGACGAGTATAGTCTTCTAGATTCAGAATCAGATTATGTCATTTGTAGACTGCGAAAGAACGATAAATCATCACCACCATCGTCTGAGTGGAATGGAAACAAGAGAACATACAGTGCATTATGCCAAGAATCAAAGGAGACTTTGTCATCTGTCACTAACAAAAAGCTATTGAGAAAGCAAAGTAATGAGACGATGAATGTGAACAACAAGAAGAACAACACCTTGTCTGATCAGACAATAGCTCAGACAAAGAGGATGCAACCTGGCACGAAAATCAAATTATTTGGAGTAGAGATAGATTCAGATCTTAAGTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

48.61

Weight (kDa)

9.25

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 145 8.1e-20 No apical meristem (NAM) protein
NAM PF02365 183 - 315 2.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 722
AccI GTMKAC 2 cut(s) 469, 976
AciI CCGC 1 cut(s) 787
AclWI GGATC 4 cut(s) 192, 205, 292, 805
AcsI RAATTY 2 cut(s) 371, 445
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 607
AflII CTTAAG 1 cut(s) 1238
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 3 cut(s) 121, 336, 441
AjnI CCWGG 2 cut(s) 313, 1192
AluBI AGCT 4 cut(s) 340, 751, 1096, 1172
AluI AGCT 4 cut(s) 340, 751, 1096, 1172
Alw26I GTCTC 2 cut(s) 1061, 1112
AlwI GGATC 4 cut(s) 192, 205, 292, 805
ApoI RAATTY 2 cut(s) 371, 445
AspLEI GCGC 2 cut(s) 276, 723
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 4 cut(s) 170, 320, 622, 993
AxyI CCTNAGG 1 cut(s) 141
BamHI GGATCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 425, 935
BccI CCATC 4 cut(s) 112, 238, 251, 1015
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 315, 1194
BclI TGATCA 4 cut(s) 51, 574, 585, 1159
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 1061, 1112
BfaI CTAG 2 cut(s) 929, 947
BfrI CTTAAG 1 cut(s) 1238
BglII AGATCT 2 cut(s) 690, 1234
Bme1390I CCNGG 3 cut(s) 254, 315, 1194
BmiI GGNNCC 3 cut(s) 199, 563, 681
BmrFI CCNGG 3 cut(s) 254, 315, 1194
BmsI GCATC 3 cut(s) 632, 814, 1176
BpiI GAAGAC 2 cut(s) 425, 935
BpuEI CTTGAG 2 cut(s) 737, 752
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 1233
BsaJI CCNNGG 3 cut(s) 170, 549, 683
BsaXI ACNNNNNCTCC 6 cut(s) 292, 322, 768, 798, 1058, 1088
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 2 cut(s) 315, 1194
BseDI CCNNGG 3 cut(s) 170, 549, 683
BseGI GGATG 2 cut(s) 262, 1191
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 4 cut(s) 132, 606, 1005, 1187
BsgI GTGCAG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 2 cut(s) 1061, 1112
BsmBI CGTCTC 1 cut(s) 1112
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 2 cut(s) 267, 780
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 1 cut(s) 787
BspCNI CTCAG 4 cut(s) 133, 607, 1006, 1186
BspLI GGNNCC 3 cut(s) 199, 563, 681
BspPI GGATC 4 cut(s) 192, 205, 292, 805
BspQI GCTCTTC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 1238
BssECI CCNNGG 3 cut(s) 170, 549, 683
BssT1I CCWWGG 2 cut(s) 170, 683
Bst2UI CCWGG 2 cut(s) 315, 1194
Bst4CI ACNGT 4 cut(s) 207, 582, 635, 1043
Bst6I CTCTTC 3 cut(s) 230, 417, 494
BstAFI CTTAAG 1 cut(s) 1238
BstAPI GCANNNNNTGC 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 4 cut(s) 141, 615, 1014, 1173
BstDSI CCRYGG 2 cut(s) 170, 549
BstF5I GGATG 2 cut(s) 262, 1191
BstHHI GCGC 2 cut(s) 276, 723
BstMAI GTCTC 2 cut(s) 1061, 1112
BstMWI GCNNNNNNNGC 4 cut(s) 273, 529, 718, 786
BstNI CCWGG 2 cut(s) 315, 1194
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 3 cut(s) 252, 313, 1192
BstV2I GAAGAC 2 cut(s) 425, 935
BstX2I RGATCY 4 cut(s) 197, 284, 690, 1234
BstYI RGATCY 4 cut(s) 197, 284, 690, 1234
Bsu36I CCTNAGG 1 cut(s) 141
BtgI CCRYGG 2 cut(s) 170, 549
BtsCI GGATG 2 cut(s) 262, 1191
BtsIMutI CAGTG 1 cut(s) 1048
Cac8I GCNNGC 1 cut(s) 763
CfoI GCGC 2 cut(s) 276, 723
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 171, 700, 713, 914
CviJI RGCY 6 cut(s) 113, 340, 751, 765, 1096, 1172
CviKI_1 RGCY 6 cut(s) 113, 340, 751, 765, 1096, 1172
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 4 cut(s) 141, 615, 1014, 1173
Eam1104I CTCTTC 3 cut(s) 230, 417, 494
EarI CTCTTC 3 cut(s) 230, 417, 494
Eco130I CCWWGG 2 cut(s) 170, 683
Eco32I GATATC 1 cut(s) 513
Eco81I CCTNAGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 313, 1192
EcoRV GATATC 1 cut(s) 513
EcoT14I CCWWGG 2 cut(s) 170, 683
ErhI CCWWGG 2 cut(s) 170, 683
Esp3I CGTCTC 1 cut(s) 1112
FaeI CATG 4 cut(s) 174, 703, 716, 917
FaqI GGGAC 1 cut(s) 820
FatI CATG 4 cut(s) 170, 699, 712, 913
FbaI TGATCA 4 cut(s) 51, 574, 585, 1159
FblI GTMKAC 2 cut(s) 469, 976
FokI GGATG 2 cut(s) 269, 1198
FspBI CTAG 2 cut(s) 929, 947
FspI TGCGCA 1 cut(s) 722
GlaI GCGC 2 cut(s) 275, 722
HapII CCGG 1 cut(s) 254
HhaI GCGC 2 cut(s) 276, 723
Hin1II CATG 4 cut(s) 174, 703, 716, 917
Hin6I GCGC 2 cut(s) 274, 721
HinP1I GCGC 2 cut(s) 274, 721
HincII GTYRAC 2 cut(s) 148, 470
HindII GTYRAC 2 cut(s) 148, 470
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 7 cut(s) 332, 471, 527, 950, 956, 1058, 1229
HpaII CCGG 1 cut(s) 254
HphI GGTGA 4 cut(s) 170, 320, 622, 993
Hpy166II GTNNAC 9 cut(s) 85, 148, 250, 263, 311, 470, 776, 977, 1132
Hpy188III TCNNGA 6 cut(s) 487, 694, 754, 769, 929, 947
Hpy8I GTNNAC 9 cut(s) 85, 148, 250, 263, 311, 470, 776, 977, 1132
HpyAV CCTTC 4 cut(s) 299, 489, 601, 867
HpyCH4III ACNGT 4 cut(s) 207, 582, 635, 1043
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 95, 346, 452, 545, 1046, 1189
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 529, 718, 786
HpyF3I CTNAG 4 cut(s) 141, 615, 1014, 1173
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 4 cut(s) 174, 703, 716, 917
HspAI GCGC 2 cut(s) 274, 721
Ksp22I TGATCA 4 cut(s) 51, 574, 585, 1159
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 813
LweI GCATC 3 cut(s) 632, 814, 1176
MaeI CTAG 2 cut(s) 929, 947
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 4 cut(s) 590, 610, 635, 1081
MboII GAAGA 7 cut(s) 56, 217, 425, 434, 511, 935, 1153
MflI RGATCY 4 cut(s) 197, 284, 690, 1234
MluCI AATT 7 cut(s) 121, 371, 445, 538, 833, 881, 1208
MlyI GAGTC 2 cut(s) 465, 536
MmeI TCCRAC 2 cut(s) 262, 499
MseI TTAA 2 cut(s) 840, 1239
MspCI CTTAAG 1 cut(s) 1238
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 254, 315, 1194
Mva1269I GAATGC 2 cut(s) 267, 780
MvaI CCWGG 2 cut(s) 315, 1194
MwoI GCNNNNNNNGC 4 cut(s) 273, 529, 718, 786
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 170
NlaIII CATG 4 cut(s) 174, 703, 716, 917
NlaIV GGNNCC 3 cut(s) 199, 563, 681
NmuCI GTSAC 2 cut(s) 610, 1081
NsbI TGCGCA 1 cut(s) 722
NspI RCATGY 1 cut(s) 703
PciI ACATGT 1 cut(s) 699
PciSI GCTCTTC 1 cut(s) 230
PctI GAATGC 2 cut(s) 267, 780
PfeI GAWTC 5 cut(s) 332, 950, 956, 1058, 1229
PflFI GACNNNGTC 1 cut(s) 1072
PleI GAGTC 2 cut(s) 465, 535
PpsI GAGTC 2 cut(s) 465, 535
PscI ACATGT 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 313, 1192
PspGI CCWGG 2 cut(s) 313, 1192
PspN4I GGNNCC 3 cut(s) 199, 563, 681
PsuI RGATCY 4 cut(s) 197, 284, 690, 1234
PsyI GACNNNGTC 1 cut(s) 1072
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SalI GTCGAC 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 840, 1239
SchI GAGTC 2 cut(s) 465, 536
ScrFI CCNGG 3 cut(s) 254, 315, 1194
SfaNI GCATC 3 cut(s) 632, 814, 1176
SmlI CTYRAG 3 cut(s) 752, 767, 1238
SmoI CTYRAG 3 cut(s) 752, 767, 1238
Sse9I AATT 7 cut(s) 121, 371, 445, 538, 833, 881, 1208
SsiI CCGC 1 cut(s) 787
SspI AATATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 929, 947
StyD4I CCNGG 3 cut(s) 252, 313, 1192
StyI CCWWGG 2 cut(s) 170, 683
TaaI ACNGT 4 cut(s) 207, 582, 635, 1043
TaiI ACGT 1 cut(s) 191
TaqI TCGA 5 cut(s) 66, 330, 376, 469, 800
TasI AATT 7 cut(s) 121, 371, 445, 538, 833, 881, 1208
TfiI GAWTC 5 cut(s) 332, 950, 956, 1058, 1229
Tru1I TTAA 2 cut(s) 840, 1239
Tru9I TTAA 2 cut(s) 840, 1239
TscAI CASTG 1 cut(s) 1048
TseFI GTSAC 2 cut(s) 610, 1081
Tsp45I GTSAC 2 cut(s) 610, 1081
TspDTI ATGAA 4 cut(s) 57, 458, 551, 1139
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 1 cut(s) 1048
Tth111I GACNNNGTC 1 cut(s) 1072
Vha464I CTTAAG 1 cut(s) 1238
XapI RAATTY 2 cut(s) 371, 445
XbaI TCTAGA 2 cut(s) 928, 946
XceI RCATGY 1 cut(s) 703
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 1014
XmiI GTMKAC 2 cut(s) 469, 976
XspI CTAG 2 cut(s) 929, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.