Rh7AG434800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000371
Physical Location & Seq
Reverse (-)
58520041 .. 58520346
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG434800.1

Sequence Viewer

Length: 306 bp
ATGCTGGCCAATCCTTCCAAAGAAAATACATATAAAGTACCACTTGTACCTCATATTGGTTCAAAATGGCAACAACCAACAAATCAAAATGGGTTGGTTATTAGTGAGGCACAAGGCAGTAGTGAAGATAATGAATTTAGTTTTGCCTTTGATGAAATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTCAGCAACTACAACTTTGGAGATGAGTTCTTGTTGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCTTGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

4.05

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 134, 197
AfaI GTAC 2 cut(s) 39, 48
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 63
AluBI AGCT 2 cut(s) 257, 292
AluI AGCT 2 cut(s) 257, 292
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 2 cut(s) 134, 197
BalI TGGCCA 1 cut(s) 8
BbvI GCAGC 1 cut(s) 279
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseCI ATCGAT 1 cut(s) 249
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 279
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 8
BspDI ATCGAT 1 cut(s) 249
BspPI GGATC 1 cut(s) 180
BssMI GATC 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 249
Csp6I GTAC 2 cut(s) 38, 47
CviAII CATG 1 cut(s) 176
CviJI RGCY 3 cut(s) 8, 257, 292
CviKI_1 RGCY 3 cut(s) 8, 257, 292
CviQI GTAC 2 cut(s) 38, 47
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 197
FaeI CATG 1 cut(s) 179
FaiI YATR 6 cut(s) 31, 33, 54, 170, 177, 263
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 24, 230
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 279
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 137
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 2 cut(s) 134, 197
MluNI TGGCCA 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 60, 100
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 2 cut(s) 257, 292
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 179
PkrI GCNGC 1 cut(s) 294
PvuII CAGCTG 2 cut(s) 257, 292
RsaI GTAC 2 cut(s) 39, 48
RsaNI GTAC 2 cut(s) 38, 47
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 172
SetI ASST 3 cut(s) 52, 259, 294
SgeI CNNG 5 cut(s) 17, 56, 125, 188, 241
Sse9I AATT 2 cut(s) 134, 197
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 134, 197
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 147, 168, 210
XapI RAATTY 2 cut(s) 134, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.