Rh7BG423300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000371
Physical Location & Seq
Forward (+)
48208710 .. 48210247
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG423300.1

Sequence Viewer

Length: 1188 bp
ATGGATCGTTGCTTTCCGGTGGGTGTGAGATTCCACCCGACTGATGAAGAACTGGTTGGGCACTACCTCCACCTCAAGAATAATCCTAACTCGGCGACACCGTCGTTGGTACTTCCTGAGTTTGATTTGTACGGTGAGGCCGAACCCTGGATCATTTGGGATGCCTATGGAGGACCCAATCTCAAACAACAAGATCTCTTCTTTTTTACTCTCCTTAAGAAGAAGGCCAATCCCCGCGGCGGCCATGCTAGTACCCGGCATAGTCGAAGGGTTGGATCATCGGGCACATGGAGCCAAGGCGAACCCTCCAAACCTGTTTTTGGCGACAAGAACCAGGAAACCCCAATTGGGCGAAAGACTAAATTGAGGTACGAGAACAAACTGGTGCCGGAACAACACGGTTGTTGGATTATGGAGGAGTATAGCACTGTTGATGATCACTCCAGTTCTTCTGCTTCTCATGATGATTATGTGATTTGCCGACTCCGACAGAACAACACCAACAACAGATCTTCATCATCTGGACAAAGAGGAGCAATAAGAAATAATAATGATCATAACAAGAGGAAGTCTCAAGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGCTTTTACAACCAATGAGGCTAGAAAGACAGTGTCTTTGAACCAGAGTCCTAATCCTGAGCAGCAATTTGAAAATGAGTTGATTATTAGTGAGGCACAAAGCAGTATTAGTAATTGTATTGGTATGCCCGAGGATATTGATTGGCTTGATCTTGCATTGGAGGAAGTAGAAGGGGATGATAGACTATCCCCTGCACTCTCAGAACAACAAACATTATCGTCATCATTAACGTCACAGATGCAGGCCAATCCTTCCTCAGAAGAAACATATACAGTACCACCTTTACCTCACATTGGTTCAGAATGGCAACAACCAATAGATCAAAATCAGTTGGTTATTAGTGAGGCACAAGTCAGCAGCGAAGATGAAGCATTTAGTTTTGCCTTTGATGATATCATTATTCCAATGGATCATGCCTACATCAATTCTGATGAATTCAGCAACTACATCTTTGGAGACGAGTTCATGTCTGGAGGGGATGACATTGGTACAGCTGATCTACTACCACTCTCATCATCATTCCCGCAGCTGCTTGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

395

Amino Acids

44.32

Weight (kDa)

4.75

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 142 3.9e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 652
AccB1I GGYRCC 1 cut(s) 385
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 235, 237, 240, 1169
AclWI GGATC 5 cut(s) 12, 158, 283, 629, 1062
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 1079
AfaI GTAC 6 cut(s) 111, 131, 253, 371, 921, 1135
AfiI CCNNNNNNNGG 5 cut(s) 147, 239, 320, 348, 938
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 685, 716, 1181
AjnI CCWGG 2 cut(s) 146, 333
AjuI GAANNNNNNNTTGG 4 cut(s) 39, 71, 330, 362
AluBI AGCT 2 cut(s) 1139, 1174
AluI AGCT 2 cut(s) 1139, 1174
Alw26I GTCTC 2 cut(s) 576, 1095
AlwI GGATC 5 cut(s) 12, 158, 283, 629, 1062
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 4 cut(s) 138, 225, 241, 888
ApeKI GCWGC 4 cut(s) 706, 1002, 1171, 1174
ApoI RAATTY 1 cut(s) 1079
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
AspA2I CCTAGG 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 146, 581
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 602
BaeGI GKGCMC 2 cut(s) 63, 287
BanI GGYRCC 1 cut(s) 385
BbvI GCAGC 4 cut(s) 718, 1014, 1161, 1183
BccI CCATC 1 cut(s) 600
BciT130I CCWGG 2 cut(s) 148, 335
BclI TGATCA 3 cut(s) 436, 553, 586
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 576, 1095
BfaI CTAG 4 cut(s) 249, 603, 666, 1186
BfrI CTTAAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 652
BglII AGATCT 2 cut(s) 193, 509
BisI GCNGC 6 cut(s) 238, 241, 707, 1003, 1172, 1175
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 6 cut(s) 239, 242, 708, 1004, 1173, 1176
Bme1390I CCNGG 3 cut(s) 148, 256, 335
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 175, 293, 387
BmrFI CCNGG 3 cut(s) 148, 256, 335
BmsI GCATC 2 cut(s) 151, 873
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 2 cut(s) 427, 1137
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 59, 558
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 4 cut(s) 514, 585, 591, 969
BsaJI CCNNGG 5 cut(s) 146, 235, 295, 602, 774
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 239, 320, 348, 938
Bse1I ACTGG 3 cut(s) 57, 387, 444
Bse8I GATNNNNATC 4 cut(s) 514, 585, 591, 969
BseBI CCWGG 2 cut(s) 148, 335
BseDI CCNNGG 5 cut(s) 146, 235, 295, 602, 774
BseGI GGATG 4 cut(s) 166, 592, 826, 1129
BseJI GATNNNNATC 4 cut(s) 514, 585, 591, 969
BseLI CCNNNNNNNGG 5 cut(s) 147, 239, 320, 348, 938
BseMII CTCAG 4 cut(s) 108, 693, 858, 915
BseNI ACTGG 3 cut(s) 57, 387, 444
BseRI GAGGAG 2 cut(s) 431, 546
BseSI GKGCMC 2 cut(s) 63, 287
BseXI GCAGC 4 cut(s) 718, 1014, 1161, 1183
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 4 cut(s) 140, 227, 243, 890
BshNI GGYRCC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 3 cut(s) 17, 256, 389
BslI CCNNNNNNNGG 5 cut(s) 147, 239, 320, 348, 938
BsmAI GTCTC 2 cut(s) 576, 1095
BsmBI CGTCTC 1 cut(s) 1095
BsnI GGCC 4 cut(s) 140, 227, 243, 890
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 63, 287
BspACI CCGC 4 cut(s) 235, 237, 240, 1169
BspANI GGCC 4 cut(s) 140, 227, 243, 890
BspCNI CTCAG 4 cut(s) 109, 694, 857, 914
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 175, 293, 387
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 5 cut(s) 12, 158, 283, 629, 1062
BspT107I GGYRCC 1 cut(s) 385
BspTI CTTAAG 1 cut(s) 215
BsrI ACTGG 3 cut(s) 57, 387, 444
BssECI CCNNGG 5 cut(s) 146, 235, 295, 602, 774
BssT1I CCWWGG 2 cut(s) 295, 602
Bst2UI CCWGG 2 cut(s) 148, 335
Bst4CI ACNGT 7 cut(s) 102, 134, 401, 430, 628, 676, 919
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 888
BstDEI CTNAG 4 cut(s) 117, 702, 844, 901
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 4 cut(s) 166, 592, 826, 1129
BstFNI CGCG 1 cut(s) 237
BstMAI GTCTC 2 cut(s) 576, 1095
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 148, 335
BstSCI CCNGG 3 cut(s) 146, 254, 333
BstSLI GKGCMC 2 cut(s) 63, 287
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 718, 1014, 1161, 1183
BstX2I RGATCY 2 cut(s) 193, 509
BstYI RGATCY 2 cut(s) 193, 509
BsuRI GGCC 4 cut(s) 140, 227, 243, 890
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 4 cut(s) 166, 592, 826, 1129
BtsIMutI CAGTG 2 cut(s) 426, 681
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 1 cut(s) 888
CaiI CAGNNNCTG 1 cut(s) 632
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 173
Cfr42I CCGCGG 1 cut(s) 238
Csp6I GTAC 6 cut(s) 110, 130, 252, 370, 920, 1134
CviAII CATG 5 cut(s) 245, 288, 461, 1058, 1111
CviQI GTAC 6 cut(s) 110, 130, 252, 370, 920, 1134
DdeI CTNAG 4 cut(s) 117, 702, 844, 901
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 295, 602
Eco32I GATATC 1 cut(s) 1039
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 1079
EcoRII CCWGG 2 cut(s) 146, 333
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 2 cut(s) 295, 602
ErhI CCWWGG 2 cut(s) 295, 602
Esp3I CGTCTC 1 cut(s) 1095
FaeI CATG 5 cut(s) 248, 291, 464, 1061, 1114
FatI CATG 5 cut(s) 244, 287, 460, 1057, 1110
FauI CCCGC 2 cut(s) 242, 1176
FbaI TGATCA 3 cut(s) 436, 553, 586
Fnu4HI GCNGC 6 cut(s) 238, 241, 707, 1003, 1172, 1175
FokI GGATG 4 cut(s) 173, 579, 833, 1136
Fsp4HI GCNGC 6 cut(s) 238, 241, 707, 1003, 1172, 1175
FspBI CTAG 4 cut(s) 249, 603, 666, 1186
GluI GCNGC 6 cut(s) 238, 241, 707, 1003, 1172, 1175
GsuI CTGGAG 2 cut(s) 427, 1137
HaeIII GGCC 4 cut(s) 140, 227, 243, 890
HapII CCGG 3 cut(s) 17, 256, 389
Hin1II CATG 5 cut(s) 248, 291, 464, 1061, 1114
HinfI GANTC 3 cut(s) 30, 483, 691
HpaII CCGG 3 cut(s) 17, 256, 389
HphI GGTGA 2 cut(s) 146, 581
Hpy188I TCNGA 5 cut(s) 488, 847, 904, 946, 1075
Hpy188III TCNNGA 7 cut(s) 76, 116, 461, 522, 575, 701, 1116
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 4 cut(s) 217, 261, 809, 906
HpyCH4III ACNGT 7 cut(s) 102, 134, 401, 430, 628, 676, 919
HpyCH4IV ACGT 1 cut(s) 875
HpyCH4V TGCA 3 cut(s) 800, 839, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 4 cut(s) 117, 702, 844, 901
HpySE526I ACGT 1 cut(s) 875
Hsp92II CATG 5 cut(s) 248, 291, 464, 1061, 1114
Ksp22I TGATCA 3 cut(s) 436, 553, 586
KspI CCGCGG 1 cut(s) 238
LmnI GCTCC 2 cut(s) 291, 533
Lsp1109I GCAGC 4 cut(s) 718, 1014, 1161, 1183
LweI GCATC 2 cut(s) 151, 873
MaeI CTAG 4 cut(s) 249, 603, 666, 1186
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 1 cut(s) 876
MboII GAAGA 7 cut(s) 59, 190, 232, 441, 504, 917, 1019
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 193, 509
MhlI GDGCHC 2 cut(s) 63, 287
MluCI AATT 6 cut(s) 345, 362, 710, 757, 1069, 1079
MlyI GAGTC 2 cut(s) 477, 700
MmeI TCCRAC 3 cut(s) 253, 386, 511
MseI TTAA 2 cut(s) 216, 872
MspA1I CMGCKG 3 cut(s) 237, 1139, 1174
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 3 cut(s) 17, 256, 389
MspR9I CCNGG 3 cut(s) 148, 256, 335
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 2 cut(s) 148, 335
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 256
NlaIII CATG 5 cut(s) 248, 291, 464, 1061, 1114
NlaIV GGNNCC 3 cut(s) 175, 293, 387
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 876
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 138
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 2 cut(s) 100, 676
PkrI GCNGC 6 cut(s) 239, 242, 708, 1004, 1173, 1176
PleI GAGTC 2 cut(s) 477, 699
PpsI GAGTC 2 cut(s) 477, 699
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 146, 333
PspGI CCWGG 2 cut(s) 146, 333
PspN4I GGNNCC 3 cut(s) 175, 293, 387
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 2 cut(s) 193, 509
PsyI GACNNNGTC 2 cut(s) 100, 676
PvuII CAGCTG 2 cut(s) 1139, 1174
RsaI GTAC 6 cut(s) 111, 131, 253, 371, 921, 1135
RsaNI GTAC 6 cut(s) 110, 130, 252, 370, 920, 1134
SacII CCGCGG 1 cut(s) 238
SaqAI TTAA 2 cut(s) 216, 872
SatI GCNGC 6 cut(s) 238, 241, 707, 1003, 1172, 1175
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 477, 700
ScrFI CCNGG 3 cut(s) 148, 256, 335
SduI GDGCHC 2 cut(s) 63, 287
SfaNI GCATC 2 cut(s) 151, 873
Sfr303I CCGCGG 1 cut(s) 238
SgrBI CCGCGG 1 cut(s) 238
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 3 cut(s) 74, 215, 573
SmoI CTYRAG 3 cut(s) 74, 215, 573
Sse9I AATT 6 cut(s) 345, 362, 710, 757, 1069, 1079
SsiI CCGC 4 cut(s) 235, 237, 240, 1169
SspMI CTAG 4 cut(s) 249, 603, 666, 1186
StyD4I CCNGG 3 cut(s) 146, 254, 333
StyI CCWWGG 2 cut(s) 295, 602
TaaI ACNGT 7 cut(s) 102, 134, 401, 430, 628, 676, 919
TaiI ACGT 1 cut(s) 878
TaqI TCGA 1 cut(s) 265
TasI AATT 6 cut(s) 345, 362, 710, 757, 1069, 1079
TauI GCSGC 2 cut(s) 240, 243
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 216, 872
Tru9I TTAA 2 cut(s) 216, 872
TscAI CASTG 2 cut(s) 433, 681
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 4 cut(s) 706, 1002, 1171, 1174
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 5 cut(s) 60, 504, 1026, 1092, 1099
TspRI CASTG 2 cut(s) 433, 681
Tth111I GACNNNGTC 2 cut(s) 100, 676
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 602
XspI CTAG 4 cut(s) 249, 603, 666, 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.