Rroxscaffold_2G00116990
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000371
Physical Location & Seq
Forward (+)
44406985 .. 44408238
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116990.1

Sequence Viewer

Length: 1254 bp
ATGCCTTCTGTTCTGGTGGGTTTCAGGTTCCACCCAACTGATGAAGAACTGATCAGTTATTTCCTCTACAACAAGAACAATGTCGGCACAATGGCAGAAGTGCCATCAATGGCTACATACAATTACAACAAAATAATGCCCGAGCTTGACCTTTATGGTGATGTAGAACCATGGCAGATTTGGGAAACGTATGGGGGATCGGAACTGTATGACCAGGATATGTTCTTTTTCACACAGCACAAGACGGTAAACCCCGATGGTTTACGCATTCATCGCAAGGTTGGATCTGGTGGTACTTGGAGTGAAGGAGAACCTGGAAAACTTATTTTTGATCCAAAGCATAAGCAGAAACCTATTGGACAAAAAAGGAAATTTCGATATGAGAATAAAGGGTCTGACCACAATGGTTCTTGGTATTTGGAAGAGTATAGTCTTCTTCTAACTAACTGTGCAAATTATGTACTTTGTCGGCTCCGGCAAAACATCAAGACACGAAAGAAGAGGAAGGAGATATTATTGTGCCAAGAATCTAGTGCATTGCCAATGAGTTACATACCTGTAGGGTTCAGGTTCCACCCCACGGATCCAGAGTTGATCAGTTACTTCCTCTACAACAAGCTGACAGAGGAAGCATCATTATACAGTTACAAAAACATTGTGTGCGAGTTTGATCTTTTTGGAACCACAGAACCTTGGGAGATTTGGGACATGTATGGGGGACATGAGTTGTGCAACCAAAACTTGTTCTTTTTCACAAAGCTCAAGAAGGCGAGCCTCAACGGCTCACGCATTCTCCGCAAGATTGGATCAAGTGGGACTTGGAGCGAAACAGATGCCTCCAAATTGATTAAAGATGAGGAATTGCAAAAACCTATTGGGCGGAGGAGGAAACTGCGATACGAGAGCAAATGTTCCAAACACCACGGTCATTGGTATTTGGATGAGTATAGTCTTCTAGATGCTAAATCAGATTATGTGATTTGTAGACTGCGAAAGAACAACAAATCACCACTGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGCATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTGCTTTCTGTTACTAGCAAAAAGCTAAAGCGAAAGCAAAGTACTGTGATGATGAATATAACCAACAACAAGAACAACTTGTCTGACCAGCCAATAGATCAGACAAAGAGGACAGAACCTTGCACGAAATTCAAATTATTTGGTGTAGAGATAGGTTCTAACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

48.7

Weight (kDa)

9.18

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 145 6.4e-21 No apical meristem (NAM) protein
NAM PF02365 186 - 318 1.6e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 985
AciI CCGC 2 cut(s) 796, 880
AclWI GGATC 6 cut(s) 205, 292, 326, 578, 591, 814
AcsI RAATTY 2 cut(s) 371, 1214
AfaI GTAC 4 cut(s) 295, 462, 1049, 1129
AfiI CCNNNNNNNGG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 1 cut(s) 1219
AjnI CCWGG 2 cut(s) 213, 313
AluBI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AluI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AlwI GGATC 6 cut(s) 205, 292, 326, 578, 591, 814
AlwNI CAGNNNCTG 1 cut(s) 1087
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 1087
ApoI RAATTY 2 cut(s) 371, 1214
AsuHPI GGTGA 2 cut(s) 170, 999
AvaI CYCGRG 1 cut(s) 140
BamHI GGATCC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 425, 944
BbvI GCAGC 1 cut(s) 1074
BccI CCATC 2 cut(s) 112, 251
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 215, 315
BclI TGATCA 2 cut(s) 51, 594
BfaI CTAG 3 cut(s) 531, 956, 1101
BfmI CTRYAG 1 cut(s) 558
BglI GCCNNNNNGGC 1 cut(s) 780
BisI GCNGC 1 cut(s) 1088
BlsI GCNGC 1 cut(s) 1089
BmcAI AGTACT 1 cut(s) 1129
Bme1390I CCNGG 2 cut(s) 215, 315
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 5 cut(s) 29, 473, 572, 585, 682
BmrFI CCNGG 2 cut(s) 215, 315
BmsI GCATC 3 cut(s) 641, 823, 949
BpiI GAAGAC 2 cut(s) 425, 944
BpuEI CTTGAG 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 170, 579, 692, 922
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse3DI GCAATG 1 cut(s) 536
BseBI CCWGG 2 cut(s) 215, 315
BseDI CCNNGG 4 cut(s) 170, 579, 692, 922
BseGI GGATG 1 cut(s) 946
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 898
BseXI GCAGC 1 cut(s) 1074
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 475
BslFI GGGAC 3 cut(s) 719, 732, 829
BslI CCNNNNNNNGG 1 cut(s) 580
BsmFI GGGAC 3 cut(s) 719, 732, 829
BsmI GAATGC 2 cut(s) 267, 789
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 796, 880
BspLI GGNNCC 5 cut(s) 29, 473, 572, 585, 682
BspPI GGATC 6 cut(s) 205, 292, 326, 578, 591, 814
BsrDI GCAATG 1 cut(s) 536
BssECI CCNNGG 4 cut(s) 170, 579, 692, 922
BssMI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BssT1I CCWWGG 2 cut(s) 170, 692
Bst2UI CCWGG 2 cut(s) 215, 315
Bst4CI ACNGT 7 cut(s) 207, 247, 449, 644, 926, 1052, 1132
Bst6I CTCTTC 2 cut(s) 417, 494
BstAPI GCANNNNNTGC 1 cut(s) 1087
BstC8I GCNNGC 1 cut(s) 772
BstDSI CCRYGG 3 cut(s) 170, 579, 922
BstF5I GGATG 1 cut(s) 946
BstKTI GATC 9 cut(s) 54, 200, 287, 334, 586, 597, 673, 809, 1186
BstMBI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
BstNI CCWGG 2 cut(s) 215, 315
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 213, 313
BstSFI CTRYAG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 1074
BstV2I GAAGAC 2 cut(s) 425, 944
BstX2I RGATCY 2 cut(s) 284, 583
BstYI RGATCY 2 cut(s) 284, 583
BtgI CCRYGG 3 cut(s) 170, 579, 922
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 946
BtsI GCAGTG 1 cut(s) 1010
BtsIMutI CAGTG 2 cut(s) 1010, 1057
Cac8I GCNNGC 1 cut(s) 772
CaiI CAGNNNCTG 1 cut(s) 1087
Csp6I GTAC 4 cut(s) 294, 461, 1048, 1128
CspCI CAANNNNNGTGG 4 cut(s) 911, 946, 999, 1034
CviAII CATG 3 cut(s) 171, 709, 722
CviQI GTAC 4 cut(s) 294, 461, 1048, 1128
DpnI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
DpnII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Eam1104I CTCTTC 2 cut(s) 417, 494
EarI CTCTTC 2 cut(s) 417, 494
EciI GGCGGA 1 cut(s) 895
Eco130I CCWWGG 2 cut(s) 170, 692
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 213, 313
EcoT14I CCWWGG 2 cut(s) 170, 692
ErhI CCWWGG 2 cut(s) 170, 692
FaeI CATG 3 cut(s) 174, 712, 725
FalI AAGNNNNNCTT 4 cut(s) 802, 834, 1148, 1180
FaqI GGGAC 3 cut(s) 719, 732, 829
FatI CATG 3 cut(s) 170, 708, 721
FbaI TGATCA 2 cut(s) 51, 594
FblI GTMKAC 1 cut(s) 985
Fnu4HI GCNGC 1 cut(s) 1088
FokI GGATG 1 cut(s) 953
Fsp4HI GCNGC 1 cut(s) 1088
FspBI CTAG 3 cut(s) 531, 956, 1101
GluI GCNGC 1 cut(s) 1088
HapII CCGG 1 cut(s) 475
Hin1II CATG 3 cut(s) 174, 712, 725
HinfI GANTC 2 cut(s) 527, 1067
HpaII CCGG 1 cut(s) 475
HphI GGTGA 2 cut(s) 170, 999
Hpy166II GTNNAC 3 cut(s) 250, 263, 986
Hpy188I TCNGA 6 cut(s) 202, 397, 970, 1024, 1171, 1188
Hpy188III TCNNGA 4 cut(s) 487, 587, 763, 956
Hpy8I GTNNAC 3 cut(s) 250, 263, 986
HpyAV CCTTC 4 cut(s) 15, 299, 499, 760
HpyCH4III ACNGT 7 cut(s) 207, 247, 449, 644, 926, 1052, 1132
HpyCH4IV ACGT 2 cut(s) 188, 1248
HpyCH4V TGCA 6 cut(s) 452, 536, 732, 865, 1055, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
HpySE526I ACGT 2 cut(s) 188, 1248
Hsp92II CATG 3 cut(s) 174, 712, 725
Ksp22I TGATCA 2 cut(s) 51, 594
Kzo9I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
LmnI GCTCC 2 cut(s) 477, 822
Lsp1109I GCAGC 1 cut(s) 1074
LweI GCATC 3 cut(s) 641, 823, 949
MaeI CTAG 3 cut(s) 531, 956, 1101
MaeII ACGT 2 cut(s) 188, 1248
MaeIII GTNAC 4 cut(s) 548, 599, 644, 1096
MalI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
MboI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
MboII GAAGA 6 cut(s) 56, 425, 428, 434, 511, 944
MflI RGATCY 2 cut(s) 284, 583
MluCI AATT 7 cut(s) 121, 371, 454, 842, 860, 1214, 1220
MmeI TCCRAC 1 cut(s) 262
MseI TTAA 1 cut(s) 849
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 2 cut(s) 215, 315
Mva1269I GAATGC 2 cut(s) 267, 789
MvaI CCWGG 2 cut(s) 215, 315
MwoI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
NcoI CCATGG 1 cut(s) 170
NdeII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
NlaIII CATG 3 cut(s) 174, 712, 725
NlaIV GGNNCC 5 cut(s) 29, 473, 572, 585, 682
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PctI GAATGC 2 cut(s) 267, 789
PfeI GAWTC 2 cut(s) 527, 1067
PkrI GCNGC 1 cut(s) 1089
PscI ACATGT 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 213, 313
PspGI CCWGG 2 cut(s) 213, 313
PspN4I GGNNCC 5 cut(s) 29, 473, 572, 585, 682
PstNI CAGNNNCTG 1 cut(s) 1087
PsuI RGATCY 2 cut(s) 284, 583
RsaI GTAC 4 cut(s) 295, 462, 1049, 1129
RsaNI GTAC 4 cut(s) 294, 461, 1048, 1128
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 1 cut(s) 1088
Sau3AI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
ScaI AGTACT 1 cut(s) 1129
ScrFI CCNGG 2 cut(s) 215, 315
SfaNI GCATC 3 cut(s) 641, 823, 949
SfcI CTRYAG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 7 cut(s) 121, 371, 454, 842, 860, 1214, 1220
SsiI CCGC 2 cut(s) 796, 880
SspMI CTAG 3 cut(s) 531, 956, 1101
StyD4I CCNGG 2 cut(s) 213, 313
StyI CCWWGG 2 cut(s) 170, 692
TaaI ACNGT 7 cut(s) 207, 247, 449, 644, 926, 1052, 1132
TaiI ACGT 2 cut(s) 191, 1251
TaqI TCGA 1 cut(s) 376
TasI AATT 7 cut(s) 121, 371, 454, 842, 860, 1214, 1220
TatI WGTACW 3 cut(s) 460, 1047, 1127
TfiI GAWTC 2 cut(s) 527, 1067
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 2 cut(s) 1017, 1057
TseI GCWGC 1 cut(s) 1087
TspDTI ATGAA 3 cut(s) 57, 260, 1154
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 2 cut(s) 1017, 1057
XapI RAATTY 2 cut(s) 371, 1214
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 1023
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 3 cut(s) 531, 956, 1101
ZrmI AGTACT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.