FvH4_5g34901

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000371
Physical Location & Seq
Reverse (-)
25545082 .. 25550035
4954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34901.t1

Sequence Viewer

Length: 459 bp
ATGGCCTCTGCCTCCTCCTCTATCTCTTCCCTCCCTTCACCCAATACTTCTCACTTCATCAAACTCACAGAAACCAATTACCTCGTCTGGCTTCGTCAAATCAAACCTTACCTCTATGGAAACAAACTTTGGGGCTATGTTGATGGCTCTATTCCTGCTCCCTCTACCACCATTTTTTCCACCCCATCCACACCTTCTTCCGCCACCACCGACGATGCTCCTTCTGTCCAAGGTAATATCAACAAGCAGATACCAATGATAAAAGAATTCGCTTTTGCTTATGATGATGATTTCAGTAATCTTCCTATGGATCCAGCCTACATTAACTCTGATGAATTCAGCAGCTACATCTTTGGAGACGAGTTCTTGGCGGGAGGGGATGACATTGGTACAACAAATATACTACAAGGCTCCTCATCATTTTCAGCGCTGCTTGAAGATCAGAATCATGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

153

Amino Acids

16.55

Weight (kDa)

4.1

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 21 - 54 4.6e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 371
AclWI GGATC 2 cut(s) 305, 318
AcsI RAATTY 2 cut(s) 266, 335
AfaI GTAC 1 cut(s) 391
AfeI AGCGCT 1 cut(s) 429
AgsI TTSAA 1 cut(s) 437
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 2 cut(s) 305, 318
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 342, 430
ApoI RAATTY 2 cut(s) 266, 335
AspLEI GCGC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 354, 417
BccI CCATC 2 cut(s) 137, 193
BcoDI GTCTC 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 2 cut(s) 343, 431
BlsI GCNGC 2 cut(s) 344, 432
BmiI GGNNCC 2 cut(s) 312, 412
BmsI GCATC 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 185, 385
BseJI GATNNNNATC 1 cut(s) 444
BseRI GAGGAG 3 cut(s) 4, 7, 403
BseXI GCAGC 2 cut(s) 354, 417
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 351
BsmBI CGTCTC 1 cut(s) 351
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 310, 439
BspACI CCGC 2 cut(s) 201, 371
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 312, 412
BspPI GGATC 2 cut(s) 305, 318
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 310, 439
BssT1I CCWWGG 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 185, 385
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 313, 442
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 2 cut(s) 310, 439
BstV1I GCAGC 2 cut(s) 354, 417
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 185, 385
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 390
CviAII CATG 1 cut(s) 449
CviJI RGCY 7 cut(s) 5, 91, 135, 147, 317, 345, 411
CviKI_1 RGCY 7 cut(s) 5, 91, 135, 147, 317, 345, 411
CviQI GTAC 1 cut(s) 390
DpnI GATC 2 cut(s) 312, 441
DpnII GATC 2 cut(s) 310, 439
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 266, 335
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 1 cut(s) 452
FaiI YATR 7 cut(s) 117, 138, 282, 308, 401, 450, 457
FatI CATG 1 cut(s) 448
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 343, 431
FokI GGATG 2 cut(s) 172, 392
Fsp4HI GCNGC 2 cut(s) 343, 431
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 343, 431
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 430
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 1 cut(s) 445
HphI GGTGA 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 331, 444
Hpy188III TCNNGA 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 45, 204, 231
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 310, 439
LmnI GCTCC 3 cut(s) 163, 223, 416
LpnPI CCDG 3 cut(s) 73, 168, 327
Lsp1109I GCAGC 2 cut(s) 354, 417
LweI GCATC 1 cut(s) 205
MalI GATC 2 cut(s) 312, 441
MboI GATC 2 cut(s) 310, 439
MboII GAAGA 4 cut(s) 18, 189, 293, 449
MflI RGATCY 1 cut(s) 310
MluCI AATT 3 cut(s) 76, 266, 335
MseI TTAA 1 cut(s) 324
NdeII GATC 2 cut(s) 310, 439
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 2 cut(s) 312, 412
PagI TCATGA 1 cut(s) 448
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 2 cut(s) 344, 432
PspN4I GGNNCC 2 cut(s) 312, 412
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 343, 431
Sau3AI GATC 2 cut(s) 310, 439
SetI ASST 6 cut(s) 84, 109, 114, 196, 235, 347
SfaNI GCATC 1 cut(s) 205
Sse9I AATT 3 cut(s) 76, 266, 335
SsiI CCGC 2 cut(s) 201, 371
StyI CCWWGG 1 cut(s) 229
TasI AATT 3 cut(s) 76, 266, 335
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseI GCWGC 2 cut(s) 342, 430
TspDTI ATGAA 2 cut(s) 46, 348
XapI RAATTY 2 cut(s) 266, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.