Rh1DG164900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000371
Physical Location & Seq
Forward (+)
33875720 .. 33876780
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG164900.1

Sequence Viewer

Length: 948 bp
ATGGAGGAGTATAGCACTGTTAATGATTCAAGTTCTTCTTCTGCACATGATGATTATGTGATTTGCCGACTCCAACGGAACAACACCAACAGATCATCATCATATGGACAAAGAGGACCAATAAGAAATAATAATGATAACAAGAGGAAGTCTCAAGATGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGTGTTTACAACCAGTGAGGCTAGAAAGACTGTGTCTTTAAAAATGAACCAGAGTCCTAATCCTGAGCAGCAATTTGATACAGTGGAAATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTCCTCATGATCAGGAATATGAGACTCAGCATTTGCTGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGGTAGTAGAAGGGGATACACTACCCCCTGCCCTCTCAGAACAACACACATGTTCATCATTAACTGTGCAGCCTAGTCCTACCGAAGAAGATACATATACAGTACCTCATATTGGTTCAGACTTGCACCAACCAAGAGACCAAAATGAGTTGATTACTAATGAGGGACAAAGCAGTACAAGTATTGGTATCGATGCTGTCCAATCCTTCGGAAGAAAATATATATACATGCCACATGTACCTCACATTGGTTTAGAATGGCAACAACCAACAGATCAAAATGGGTTGGTTATTAGTGAGGCACAAGGCAGTAGTGAAGATGATGCATTTCGTTTTGCCTTTGATGATATCATTATTCCTATGGATCATGCCTACATCAACTCTGATGAATTCAGCAACTACAACTTTGGAGATGAGTTCTTGTCGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCTTGGAGATCAGAATCATGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.53

Weight (kDa)

4.29

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 212, 807
AcsI RAATTY 1 cut(s) 824
AfaI GTAC 4 cut(s) 406, 540, 613, 675
AfiI CCNNNNNNNGG 2 cut(s) 548, 683
AflIII ACRYGT 2 cut(s) 485, 670
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 3 cut(s) 331, 884, 919
AluI AGCT 3 cut(s) 331, 884, 919
Alw26I GTCTC 3 cut(s) 156, 374, 567
AlwI GGATC 2 cut(s) 212, 807
AlwNI CAGNNNCTG 1 cut(s) 215
ApeKI GCWGC 3 cut(s) 295, 505, 919
ApoI RAATTY 1 cut(s) 824
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspA2I CCTAGG 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 185
BbvI GCAGC 3 cut(s) 307, 517, 906
BccI CCATC 2 cut(s) 183, 349
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 3 cut(s) 169, 349, 367
BcoDI GTCTC 3 cut(s) 156, 374, 567
BfaI CTAG 3 cut(s) 186, 249, 510
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 3 cut(s) 296, 506, 920
BlnI CCTAGG 1 cut(s) 185
BlsI GCNGC 3 cut(s) 297, 507, 921
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 2 cut(s) 619, 748
BplI GAGNNNNNCTC 2 cut(s) 136, 168
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 138
Bsa29I ATCGAT 2 cut(s) 627, 876
BsaBI GATNNNNATC 5 cut(s) 97, 168, 174, 348, 933
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 683
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 5 cut(s) 97, 168, 174, 348, 933
BseCI ATCGAT 2 cut(s) 627, 876
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 175, 874
BseJI GATNNNNATC 5 cut(s) 97, 168, 174, 348, 933
BseLI CCNNNNNNNGG 2 cut(s) 548, 683
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 3 cut(s) 282, 398, 486
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 307, 517, 906
BsgI GTGCAG 2 cut(s) 27, 524
BshVI ATCGAT 2 cut(s) 627, 876
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 548, 683
BsmAI GTCTC 3 cut(s) 156, 374, 567
BsmFI GGGAC 1 cut(s) 615
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
BspCNI CTCAG 3 cut(s) 283, 397, 485
BspDI ATCGAT 2 cut(s) 627, 876
BspHI TCATGA 2 cut(s) 364, 937
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 2 cut(s) 212, 807
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
BstDEI CTNAG 3 cut(s) 291, 384, 472
BstF5I GGATG 2 cut(s) 175, 874
BstKTI GATC 8 cut(s) 95, 172, 220, 352, 370, 712, 802, 931
BstMAI GTCTC 3 cut(s) 156, 374, 567
BstMBI GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
BstNSI RCATGY 3 cut(s) 489, 667, 674
BstV1I GCAGC 3 cut(s) 307, 517, 906
Bsu15I ATCGAT 2 cut(s) 627, 876
BsuI GTATCC 1 cut(s) 445
BsuTUI ATCGAT 2 cut(s) 627, 876
BtsCI GGATG 2 cut(s) 175, 874
BtsIMutI CAGTG 3 cut(s) 15, 247, 315
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 2 cut(s) 364, 937
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 2 cut(s) 627, 876
Csp6I GTAC 4 cut(s) 405, 539, 612, 674
CviAII CATG 7 cut(s) 47, 365, 486, 664, 671, 803, 938
CviJI RGCY 7 cut(s) 184, 196, 248, 331, 508, 884, 919
CviKI_1 RGCY 7 cut(s) 184, 196, 248, 331, 508, 884, 919
CviQI GTAC 4 cut(s) 405, 539, 612, 674
DdeI CTNAG 3 cut(s) 291, 384, 472
DpnI GATC 8 cut(s) 94, 171, 219, 351, 369, 711, 801, 930
DpnII GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
DraI TTTAAA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 824
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 2 cut(s) 433, 763
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 7 cut(s) 50, 368, 489, 667, 674, 806, 941
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 615
FatI CATG 7 cut(s) 46, 364, 485, 663, 670, 802, 937
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 3 cut(s) 169, 349, 367
Fnu4HI GCNGC 3 cut(s) 296, 506, 920
FokI GGATG 2 cut(s) 162, 881
Fsp4HI GCNGC 3 cut(s) 296, 506, 920
FspBI CTAG 3 cut(s) 186, 249, 510
GluI GCNGC 3 cut(s) 296, 506, 920
Hin1II CATG 7 cut(s) 50, 368, 489, 667, 674, 806, 941
HinfI GANTC 5 cut(s) 26, 69, 280, 382, 934
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 7 cut(s) 354, 475, 556, 647, 820, 862, 933
Hpy188III TCNNGA 5 cut(s) 155, 290, 365, 371, 938
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 440, 652, 857
HpyCH4III ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
HpyCH4V TGCA 5 cut(s) 44, 431, 505, 562, 761
HpyF3I CTNAG 3 cut(s) 291, 384, 472
Hsp92II CATG 7 cut(s) 50, 368, 489, 667, 674, 806, 941
Ksp22I TGATCA 3 cut(s) 169, 349, 367
Kzo9I GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
LpnPI CCDG 6 cut(s) 240, 253, 290, 303, 356, 477
Lsp1109I GCAGC 3 cut(s) 307, 517, 906
LweI GCATC 2 cut(s) 619, 748
MaeI CTAG 3 cut(s) 186, 249, 510
MalI GATC 8 cut(s) 94, 171, 219, 351, 369, 711, 801, 930
MboI GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
MboII GAAGA 6 cut(s) 27, 30, 533, 536, 660, 764
MluCI AATT 2 cut(s) 299, 824
MlyI GAGTC 3 cut(s) 63, 289, 376
MmeI TCCRAC 2 cut(s) 97, 840
Mph1103I ATGCAT 2 cut(s) 433, 763
MseI TTAA 3 cut(s) 21, 266, 497
MspA1I CMGCKG 2 cut(s) 884, 919
NdeI CATATG 1 cut(s) 103
NdeII GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
NlaIII CATG 7 cut(s) 50, 368, 489, 667, 674, 806, 941
NlaIV GGNNCC 1 cut(s) 360
NsiI ATGCAT 2 cut(s) 433, 763
NspI RCATGY 3 cut(s) 489, 667, 674
PagI TCATGA 2 cut(s) 364, 937
PciI ACATGT 2 cut(s) 485, 670
PfeI GAWTC 2 cut(s) 26, 934
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 297, 507, 921
PleI GAGTC 3 cut(s) 63, 288, 376
PpsI GAGTC 3 cut(s) 63, 288, 376
PscI ACATGT 2 cut(s) 485, 670
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 884, 919
RsaI GTAC 4 cut(s) 406, 540, 613, 675
RsaNI GTAC 4 cut(s) 405, 539, 612, 674
SaqAI TTAA 3 cut(s) 21, 266, 497
SatI GCNGC 3 cut(s) 296, 506, 920
Sau3AI GATC 8 cut(s) 92, 169, 217, 349, 367, 709, 799, 928
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 3 cut(s) 63, 289, 376
SetI ASST 7 cut(s) 229, 333, 441, 544, 679, 886, 921
SfaNI GCATC 2 cut(s) 619, 748
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 299, 824
SspMI CTAG 3 cut(s) 186, 249, 510
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
TaqI TCGA 2 cut(s) 627, 876
TasI AATT 2 cut(s) 299, 824
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 2 cut(s) 26, 934
Tru1I TTAA 3 cut(s) 21, 266, 497
Tru9I TTAA 3 cut(s) 21, 266, 497
TscAI CASTG 3 cut(s) 22, 247, 315
TseI GCWGC 3 cut(s) 295, 505, 919
TspDTI ATGAA 3 cut(s) 287, 480, 837
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 22, 247, 315
Tth111I GACNNNGTC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 824
XceI RCATGY 3 cut(s) 489, 667, 674
XmaJI CCTAGG 1 cut(s) 185
XspI CTAG 3 cut(s) 186, 249, 510
Zsp2I ATGCAT 2 cut(s) 433, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.