Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Reverse (-)

52663781 .. 52664578

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTGAAAACATGAGTATATCTGTGAACGGGCAATCTCAAGTCCCTCCAGGTTTCAGATTTCATCCAACCGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTATCCGGTCAGAGGATTGATCTCGATGTCATCCGCGAGGTCGATCTCAATAAACTTGAACCATGGGACGTCCAAGGTCTCCGTTGTCGTTGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACCATAGACAGCCCAATTTTGGTTGCACCAACTTCATCTATCACAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

105

Amino Acids

12.16

Weight (kDa)

7.83

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 62	5.1e-15	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	120, 284
AgsI	TTSAA	2 cut(s)	167, 245
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	3 cut(s)	24, 118, 196
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	170, 181
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 284
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	170, 181
BseGI	GGATG	3 cut(s)	64, 138, 228
BseLI	CCNNNNNNNGG	2 cut(s)	120, 284
BseRI	GAGGAG	2 cut(s)	92, 231
Bsh1236I	CGCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	29, 188
BslI	CCNNNNNNNGG	2 cut(s)	120, 284
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	29, 188
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	127, 151
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	170, 181
BssMI	GATC	2 cut(s)	127, 151
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	170, 181
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	64, 138, 228
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	130, 154
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	127, 151
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	64, 138, 228
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	13, 171
CviJI	RGCY	2 cut(s)	82, 277
CviKI_1	RGCY	2 cut(s)	82, 277
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	2 cut(s)	129, 153
DpnII	GATC	2 cut(s)	127, 151
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	170, 181
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	170, 181
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	170, 181
FaeI	CATG	2 cut(s)	16, 174
FaiI	YATR	4 cut(s)	14, 20, 172, 270
FaqI	GGGAC	2 cut(s)	29, 188
FatI	CATG	2 cut(s)	12, 170
FokI	GGATG	3 cut(s)	51, 125, 235
FriOI	GRGCYC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	16, 174
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	59, 120
Hpy188III	TCNNGA	3 cut(s)	131, 213, 245
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	88, 235, 291
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	16, 174
Kzo9I	GATC	2 cut(s)	127, 151
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	36, 63, 127
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	177
MalI	GATC	2 cut(s)	129, 153
MboI	GATC	2 cut(s)	127, 151
MboII	GAAGA	5 cut(s)	86, 115, 233, 249, 260
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	8 cut(s)	57, 70, 93, 114, 139, 197, 209, 212
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	127, 151
NlaIII	CATG	2 cut(s)	16, 174
PfeI	GAWTC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	127, 151
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	55, 84, 111, 150, 180, 187
SfaNI	GCATC	1 cut(s)	216
SmlI	CTYRAG	3 cut(s)	39, 97, 211
SmoI	CTYRAG	3 cut(s)	39, 97, 211
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	170, 181
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	132, 150
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	53, 289
TspGWI	ACGGA	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.