Prupe.6G112000_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000371
Physical Location & Seq
Forward (+)
8054391 .. 8055047
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G112000.1

Sequence Viewer

Length: 657 bp
ATGGCTAATTCCGGCGTGACACAGCTGCTCGGCTTCCGGTTCCGCCCCACGGACGGAGAAATCATCGGCTCCTTTCTCTACAAGATGGTGGTGGAGAAAAGGCCTCTGACCTCGATGCCGCAATACAACAAGGTTATCCACAAGTGCAACCTCTTCGGCAACAAATGTGAACCCTCAGAAATTTGGAGAGATTACGGAGGAGATCAACTTAAGGATCAAGACTTGTACTTCGTTTCGGAGCTCCAGAGAAACGGTTTGCGCATCCAACGCAAGACTGGCCGCGGTACTTGGAGCGAAACCGAAACCTACCAAAATGTTAAGGATGAGGTGGATGAGATTAATGGAAAATCTAATCTTGATGTTATAGGGAGAAAACGGAAATTCCGGTACGAGAACGGGAATACTTCGGAGGACCACGCCGTGTGGCTTTTGGATGAATATAGCCTTTTCAAAAATGCTTCCAAGAACGGCACAAGTAGTAATTGCTATGATTTTGACGTTGTGATTTGTCGGCTGAGAAGGAAGGGCAATATGGACAAGTCTGGGAAAAAGAGGAAGTGCTTGTCTCAAGATCAATCAAACAAGAAGACGAAAAGAGATCAATCTACAAAGGAGATGAAAACTGAAAATTCAGTGGGGCCGCAGATTATGAATGCT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

219

Amino Acids

25.31

Weight (kDa)

9.34

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 260
AccII CGCG 1 cut(s) 282
AciI CCGC 5 cut(s) 43, 119, 280, 282, 641
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 3 cut(s) 180, 380, 628
AdeI CACNNNGTG 1 cut(s) 421
AfaI GTAC 3 cut(s) 227, 286, 389
AfiI CCNNNNNNNGG 2 cut(s) 49, 53
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 451
AluBI AGCT 2 cut(s) 25, 241
AluI AGCT 2 cut(s) 25, 241
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 1 cut(s) 222
AoxI GGCC 3 cut(s) 101, 277, 638
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 3 cut(s) 180, 380, 628
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AseI ATTAAT 1 cut(s) 339
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 412, 638
AvaII GGWCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 79
BceAI ACGGC 2 cut(s) 404, 484
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcoDI GTCTC 1 cut(s) 570
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 4 cut(s) 26, 119, 280, 641
BlsI GCNGC 4 cut(s) 27, 120, 281, 642
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 412, 638
BmiI GGNNCC 3 cut(s) 41, 70, 639
BmsI GCATC 2 cut(s) 105, 270
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 48, 280
BsaWI WCCGGW 2 cut(s) 36, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 53
Bse1I ACTGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 48, 280
BseGI GGATG 4 cut(s) 261, 328, 337, 439
BseLI CCNNNNNNNGG 2 cut(s) 49, 53
BseMII CTCAG 2 cut(s) 189, 506
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 103, 279, 640
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 3 cut(s) 12, 37, 385
BslI CCNNNNNNNGG 2 cut(s) 49, 53
BsmAI GTCTC 1 cut(s) 570
BsnI GGCC 3 cut(s) 103, 279, 640
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 4 cut(s) 202, 214, 571, 598
BspACI CCGC 5 cut(s) 43, 119, 280, 282, 641
BspANI GGCC 3 cut(s) 103, 279, 640
BspCNI CTCAG 2 cut(s) 188, 507
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 41, 70, 639
BspPI GGATC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 209
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 48, 280
BssMI GATC 4 cut(s) 202, 214, 571, 598
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 158
BstAFI CTTAAG 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 175, 515
BstDSI CCRYGG 2 cut(s) 48, 280
BstF5I GGATG 4 cut(s) 261, 328, 337, 439
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 4 cut(s) 205, 217, 574, 601
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 4 cut(s) 202, 214, 571, 598
BstMWI GCNNNNNNNGC 2 cut(s) 267, 276
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 593
BsuRI GGCC 3 cut(s) 103, 279, 640
BtgI CCRYGG 2 cut(s) 48, 280
BtsCI GGATG 4 cut(s) 261, 328, 337, 439
BtsIMutI CAGTG 1 cut(s) 639
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 412, 638
Cfr42I CCGCGG 1 cut(s) 283
Csp6I GTAC 3 cut(s) 226, 285, 388
CviQI GTAC 3 cut(s) 226, 285, 388
DdeI CTNAG 2 cut(s) 175, 515
DpnI GATC 4 cut(s) 204, 216, 573, 600
DpnII GATC 4 cut(s) 202, 214, 571, 598
DraIII CACNNNGTG 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 5 cut(s) 365, 441, 489, 533, 650
Fnu4HI GCNGC 4 cut(s) 26, 119, 280, 641
FokI GGATG 4 cut(s) 248, 335, 344, 446
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 26, 119, 280, 641
FspI TGCGCA 1 cut(s) 260
GlaI GCGC 1 cut(s) 260
GluI GCNGC 4 cut(s) 26, 119, 280, 641
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 3 cut(s) 103, 279, 640
HapII CCGG 3 cut(s) 12, 37, 385
HhaI GCGC 1 cut(s) 261
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HpaII CCGG 3 cut(s) 12, 37, 385
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 4 cut(s) 108, 178, 238, 409
Hpy188III TCNNGA 4 cut(s) 218, 244, 356, 569
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 513, 517
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 276
HpyF3I CTNAG 2 cut(s) 175, 515
HpySE526I ACGT 1 cut(s) 498
HspAI GCGC 1 cut(s) 259
KspI CCGCGG 1 cut(s) 283
Kzo9I GATC 4 cut(s) 202, 214, 571, 598
LmnI GCTCC 4 cut(s) 74, 238, 246, 291
LpnPI CCDG 6 cut(s) 25, 50, 257, 261, 398, 528
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 2 cut(s) 105, 270
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 204, 216, 573, 600
MboI GATC 4 cut(s) 202, 214, 571, 598
MboII GAAGA 2 cut(s) 145, 598
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 5 cut(s) 7, 180, 380, 481, 628
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 8 cut(s) 114, 121, 161, 184, 191, 319, 403, 546
MseI TTAA 3 cut(s) 210, 318, 339
MspA1I CMGCKG 2 cut(s) 25, 282
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 3 cut(s) 12, 37, 385
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 267, 276
NdeII GATC 4 cut(s) 202, 214, 571, 598
NlaIV GGNNCC 3 cut(s) 41, 70, 639
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 260
PceI AGGCCT 1 cut(s) 103
PkrI GCNGC 4 cut(s) 27, 120, 281, 642
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 41, 70, 639
PspPI GGNCC 2 cut(s) 412, 638
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 3 cut(s) 227, 286, 389
RsaNI GTAC 3 cut(s) 226, 285, 388
SacI GAGCTC 1 cut(s) 243
SacII CCGCGG 1 cut(s) 283
SaqAI TTAA 3 cut(s) 210, 318, 339
SatI GCNGC 4 cut(s) 26, 119, 280, 641
Sau3AI GATC 4 cut(s) 202, 214, 571, 598
Sau96I GGNCC 2 cut(s) 412, 638
SduI GDGCHC 1 cut(s) 243
SetI ASST 8 cut(s) 27, 113, 135, 153, 243, 308, 330, 501
SfaNI GCATC 2 cut(s) 105, 270
Sfr303I CCGCGG 1 cut(s) 283
SgrBI CCGCGG 1 cut(s) 283
SinI GGWCC 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 209, 567
SmoI CTYRAG 2 cut(s) 209, 567
Sse9I AATT 5 cut(s) 7, 180, 380, 481, 628
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 5 cut(s) 43, 119, 280, 282, 641
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 103
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 113
TasI AATT 5 cut(s) 7, 180, 380, 481, 628
TatI WGTACW 1 cut(s) 225
TauI GCSGC 3 cut(s) 121, 282, 643
Tru1I TTAA 3 cut(s) 210, 318, 339
Tru9I TTAA 3 cut(s) 210, 318, 339
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 450, 632
TspGWI ACGGA 4 cut(s) 65, 69, 210, 391
TspRI CASTG 1 cut(s) 639
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 3 cut(s) 180, 380, 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.