pycom04g03340
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000371
Physical Location & Seq
Reverse (-)
3025450 .. 3026562
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03340.1

Sequence Viewer

Length: 1113 bp
ATGGAGGTGGGTTATTACGGTATGCCATTGGGTCTTCGGTTTCATCCTACTGATCAAGAATTGGTCGGTTCCTATCTTCGCGATAGAGCCCTCTCCGGAAAGCCCTTGGGCAAGCCATTTATTCAAGAGTTCAATCTCTTCGGACAAACACCACCGTGGGTGGTTTGGGAGCAGTTCGGCGGAAATTCCCTACTCGATCAGGACTTGTTCTTCTTCTACGAGCTGCATTCTAGAAGTGACAGCGATAGCCGCAGCAAACGCCAGATTGAAGCCGGAGGCACTTGGAGCGAAACATCCTCCGACAAAGTTTTAGGTTTGGACGGAATTCCAATCGGAGATAAAGGGCATTTCAGGTATAACAACAAGGGTTCTAATAACAATGGCGGCTGGCTGTTAGAAGAGTACAGTCTTCTTCCTAATGTAGTTGCTGGCCCAAAGGTCGTTCTTTCCCGACTTAAAAGGAATCTGAGGTCTAGGTGTGGAAGCAAGATGAATTCCTCAAGTCCAACTCACGACTTCAATGAGAAGCCACCGATTAAGAGGGCAAGAAAAGAAGTATCGAATGAGAAGCCGCTGATTAAGAGAACGAGAGCAAGAAAAGAACCGGGTTCACAAAAACATTCTAATGTGAATGTGATCACCAATACCCCTGCTGTTGTGCCTTTTGTTGGAATTGAAAGCTATATGATTACTGACACTAGGTATGATGATCAGGAGTGCATAACCAACATTAACGGTAATATGAAGCCGACTGATTTCTCTGATCCGGATAGTGTGATATTGATGAGTGATGTTCCTTCTTATCCCATATGCTTGGACAGCGACACTAGCAATCACGACCAGGGGTGCATAAGCTACATTAATGGAAATGTGATGCCCTTTCCCACTCATATTTCAGATCATGAATATGTGCCACTGATGAGTGATGTTCCTAGTTCTCCAATATTCTTGGGCGGCAGGGAATATCCTTTAGATGGTGAAGCAGTGCGTGGAGACATTAAAGAATGGTTGCCCCAGGAGTGGCCTCAAATTGACGAATTCAGCCAACTGTTAGATGGGTTCAATTACTGGACAGACTGTTTGTGGATGAGCGATTCTTCGAATGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

371

Amino Acids

41.77

Weight (kDa)

5.12

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 137 2.2e-20 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 81
AccIII TCCGGA 2 cut(s) 95, 766
AciI CCGC 5 cut(s) 180, 250, 384, 572, 954
AclWI GGATC 1 cut(s) 758
AcsI RAATTY 4 cut(s) 184, 324, 493, 1037
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 668, 974, 1020
AgsI TTSAA 6 cut(s) 125, 133, 269, 520, 677, 1063
AjnI CCWGG 2 cut(s) 840, 1014
AleI CACNNNNGTG 1 cut(s) 154
AluBI AGCT 3 cut(s) 223, 681, 855
AluI AGCT 3 cut(s) 223, 681, 855
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 1 cut(s) 758
Aor13HI TCCGGA 2 cut(s) 95, 766
AoxI GGCC 2 cut(s) 430, 1022
ApeKI GCWGC 2 cut(s) 223, 252
ApoI RAATTY 4 cut(s) 184, 324, 493, 1037
ArsI GACNNNNNNTTYG 2 cut(s) 1063, 1095
AseI ATTAAT 1 cut(s) 861
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 2 cut(s) 631, 989
AsuII TTCGAA 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 26, 401
BbvI GCAGC 2 cut(s) 210, 264
BccI CCATC 2 cut(s) 968, 1049
BciT130I CCWGG 2 cut(s) 842, 1016
BclI TGATCA 4 cut(s) 52, 636, 709, 1105
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 5 cut(s) 231, 474, 699, 828, 933
BisI GCNGC 6 cut(s) 224, 250, 253, 385, 572, 955
BlsI GCNGC 6 cut(s) 225, 251, 254, 386, 573, 956
Bme1390I CCNGG 3 cut(s) 606, 842, 1016
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 3 cut(s) 606, 842, 1016
BmsI GCATC 1 cut(s) 864
BpiI GAAGAC 2 cut(s) 26, 401
Bpu14I TTCGAA 1 cut(s) 1100
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 606
BsaJI CCNNGG 4 cut(s) 105, 155, 841, 1014
BsaWI WCCGGW 2 cut(s) 95, 766
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 974, 1020
Bse1I ACTGG 1 cut(s) 1073
BseAI TCCGGA 2 cut(s) 95, 766
BseBI CCWGG 2 cut(s) 842, 1016
BseDI CCNNGG 4 cut(s) 105, 155, 841, 1014
BseGI GGATG 3 cut(s) 43, 293, 1092
BseLI CCNNNNNNNGG 3 cut(s) 668, 974, 1020
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 1073
BseXI GCAGC 2 cut(s) 210, 264
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 432, 1024
BsiSI CCGG 4 cut(s) 96, 273, 605, 767
BslI CCNNNNNNNGG 3 cut(s) 668, 974, 1020
BsmAI GTCTC 1 cut(s) 987
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 432, 1024
Bsp119I TTCGAA 1 cut(s) 1100
Bsp1286I GDGCHC 1 cut(s) 91
Bsp13I TCCGGA 2 cut(s) 95, 766
Bsp143I GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
Bsp68I TCGCGA 1 cut(s) 81
BspACI CCGC 5 cut(s) 180, 250, 384, 572, 954
BspANI GGCC 2 cut(s) 432, 1024
BspCNI CTCAG 1 cut(s) 459
BspEI TCCGGA 2 cut(s) 95, 766
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 758
BspT104I TTCGAA 1 cut(s) 1100
BsrI ACTGG 1 cut(s) 1073
BssECI CCNNGG 4 cut(s) 105, 155, 841, 1014
BssMI GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 842, 1016
Bst4CI ACNGT 6 cut(s) 20, 156, 407, 737, 1050, 1079
Bst6I CTCTTC 2 cut(s) 143, 393
BstBI TTCGAA 1 cut(s) 1100
BstC8I GCNNGC 3 cut(s) 113, 389, 430
BstDEI CTNAG 1 cut(s) 467
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 43, 293, 1092
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 7 cut(s) 55, 199, 639, 712, 766, 901, 1108
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
BstMWI GCNNNNNNNGC 5 cut(s) 249, 258, 285, 819, 828
BstNI CCWGG 2 cut(s) 842, 1016
BstSCI CCNGG 3 cut(s) 604, 840, 1014
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 210, 264
BstV2I GAAGAC 2 cut(s) 26, 401
BstXI CCANNNNNNTGG 1 cut(s) 814
BsuRI GGCC 2 cut(s) 432, 1024
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 3 cut(s) 43, 293, 1092
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 914, 990
BtuMI TCGCGA 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 113, 389, 430
CciI TCATGA 1 cut(s) 901
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 902
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 467
DpnI GATC 7 cut(s) 54, 198, 638, 711, 765, 900, 1107
DpnII GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
Eam1104I CTCTTC 2 cut(s) 143, 393
EarI CTCTTC 2 cut(s) 143, 393
EciI GGCGGA 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 91
EcoRI GAATTC 3 cut(s) 324, 493, 1037
EcoRII CCWGG 2 cut(s) 840, 1014
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 905
FatI CATG 1 cut(s) 901
FauNDI CATATG 1 cut(s) 809
FbaI TGATCA 4 cut(s) 52, 636, 709, 1105
Fnu4HI GCNGC 6 cut(s) 224, 250, 253, 385, 572, 955
FokI GGATG 3 cut(s) 30, 280, 1099
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 6 cut(s) 224, 250, 253, 385, 572, 955
FspBI CTAG 5 cut(s) 231, 474, 699, 828, 933
GluI GCNGC 6 cut(s) 224, 250, 253, 385, 572, 955
HaeIII GGCC 2 cut(s) 432, 1024
HapII CCGG 4 cut(s) 96, 273, 605, 767
Hin1II CATG 1 cut(s) 905
HinfI GANTC 2 cut(s) 463, 1094
HpaII CCGG 4 cut(s) 96, 273, 605, 767
HphI GGTGA 2 cut(s) 631, 989
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 6 cut(s) 143, 301, 335, 468, 763, 898
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 1 cut(s) 807
HpyCH4III ACNGT 6 cut(s) 20, 156, 407, 737, 1050, 1079
HpyCH4V TGCA 3 cut(s) 226, 720, 849
HpyF10VI GCNNNNNNNGC 5 cut(s) 249, 258, 285, 819, 828
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 1 cut(s) 905
Kpn2I TCCGGA 2 cut(s) 95, 766
Ksp22I TGATCA 4 cut(s) 52, 636, 709, 1105
Kzo9I GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
LmnI GCTCC 2 cut(s) 169, 285
Lsp1109I GCAGC 2 cut(s) 210, 264
LweI GCATC 1 cut(s) 864
MaeI CTAG 5 cut(s) 231, 474, 699, 828, 933
MaeIII GTNAC 1 cut(s) 236
MalI GATC 7 cut(s) 54, 198, 638, 711, 765, 900, 1107
MboI GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
MboII GAAGA 9 cut(s) 26, 68, 130, 202, 205, 401, 404, 410, 1089
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 8 cut(s) 59, 184, 324, 493, 672, 1029, 1037, 1063
MmeI TCCRAC 3 cut(s) 324, 530, 649
MnlI CCTC 7 cut(s) 101, 269, 307, 462, 508, 534, 1035
MroI TCCGGA 2 cut(s) 95, 766
MseI TTAA 6 cut(s) 456, 537, 579, 732, 861, 999
MslI CAYNNNNRTG 3 cut(s) 154, 624, 906
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 4 cut(s) 96, 273, 605, 767
MspR9I CCNGG 3 cut(s) 606, 842, 1016
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 2 cut(s) 842, 1016
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 5 cut(s) 249, 258, 285, 819, 828
NciI CCSGG 1 cut(s) 606
NdeI CATATG 1 cut(s) 809
NdeII GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
NlaIII CATG 1 cut(s) 905
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 236
NruI TCGCGA 1 cut(s) 81
NspV TTCGAA 1 cut(s) 1100
OliI CACNNNNGTG 1 cut(s) 154
PagI TCATGA 1 cut(s) 901
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 463, 1094
PkrI GCNGC 6 cut(s) 225, 251, 254, 386, 573, 956
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 2 cut(s) 840, 1014
PspGI CCWGG 2 cut(s) 840, 1014
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 431
RruI TCGCGA 1 cut(s) 81
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 3 cut(s) 154, 624, 906
SaqAI TTAA 6 cut(s) 456, 537, 579, 732, 861, 999
SatI GCNGC 6 cut(s) 224, 250, 253, 385, 572, 955
Sau3AI GATC 7 cut(s) 52, 196, 636, 709, 763, 898, 1105
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 606, 842, 1016
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 1 cut(s) 864
SfuI TTCGAA 1 cut(s) 1100
SmiMI CAYNNNNRTG 3 cut(s) 154, 624, 906
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 8 cut(s) 59, 184, 324, 493, 672, 1029, 1037, 1063
SsiI CCGC 5 cut(s) 180, 250, 384, 572, 954
SspI AATATT 1 cut(s) 945
SspMI CTAG 5 cut(s) 231, 474, 699, 828, 933
StyD4I CCNGG 3 cut(s) 604, 840, 1014
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 6 cut(s) 20, 156, 407, 737, 1050, 1079
TaqI TCGA 3 cut(s) 195, 560, 1100
TasI AATT 8 cut(s) 59, 184, 324, 493, 672, 1029, 1037, 1063
TatI WGTACW 1 cut(s) 402
TauI GCSGC 4 cut(s) 252, 387, 574, 957
TfiI GAWTC 2 cut(s) 463, 1094
Tru1I TTAA 6 cut(s) 456, 537, 579, 732, 861, 999
Tru9I TTAA 6 cut(s) 456, 537, 579, 732, 861, 999
TscAI CASTG 2 cut(s) 921, 990
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 223, 252
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 32, 506, 758, 918
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 921, 990
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 4 cut(s) 184, 324, 493, 1037
XbaI TCTAGA 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XspI CTAG 5 cut(s) 231, 474, 699, 828, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.