Rh2CG309600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000371
Physical Location & Seq
Reverse (-)
38960650 .. 38973274
12625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG309600.1

Sequence Viewer

Length: 579 bp
ATGAAGGAATCTGTCGTATTGGTGACGTCAGTCGGGTGGAGGGGACATGAGTTGTGCAACCAAAACTTGTTCTTTTTCACAAAGCTCAAGAAGGCGAGCCTCAACGGCTCACGCATTCTCCGCAAGATTGGATCAAGTGGGACTTGGAGCGAAACAGATGCCTCCAAATTGATTAAAGATGAGGAATTGCAAAAACATATTGGGCGGAGGAGGAAACTGCGATACGAGAGCAAATGTTCCAAACACCACGGTCATTGGTATTTGGATGAGTATAGTCTTCTAGATGCTAAATCAGATTATGTGATTTGTAGACTGCGAAAGAACAACAAATCACCACTGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGTATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTGCTTTCTGTTACTAACAAAAAGCTAATGCGAAAGCAAAGTAATGTGATGATGAATATAACCAACAACAAGAACAACTTGTCTAACCAGCCAATAGATCAGACAAAGAGGACGGAACCTTGCACAAAATTCAAATTATTTGGTGTAGAGATAGGTTATAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

192

Amino Acids

22.43

Weight (kDa)

9.92

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 93 1.7e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
AatII GACGTC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 310
AciI CCGC 2 cut(s) 121, 205
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 1 cut(s) 544
AluBI AGCT 3 cut(s) 85, 412, 436
AluI AGCT 3 cut(s) 85, 412, 436
AlwI GGATC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 34, 324
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BfaI CTAG 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 528
BmsI GCATC 2 cut(s) 148, 274
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 399
BslFI GGGAC 2 cut(s) 57, 154
BsmFI GGGAC 2 cut(s) 57, 154
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 131, 508
BspACI CCGC 2 cut(s) 121, 205
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 131, 508
BssNI GRCGYC 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 251, 377
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 134, 511
BstMBI GATC 2 cut(s) 131, 508
BstMWI GCNNNNNNNGC 3 cut(s) 105, 120, 412
BstPAI GACNNNNGTC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 335, 382
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 412
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 4 cut(s) 236, 271, 324, 359
CviAII CATG 1 cut(s) 47
CviJI RGCY 6 cut(s) 85, 99, 108, 412, 436, 502
CviKI_1 RGCY 6 cut(s) 85, 99, 108, 412, 436, 502
CviQI GTAC 1 cut(s) 373
DpnI GATC 2 cut(s) 133, 510
DpnII GATC 2 cut(s) 131, 508
EciI GGCGGA 1 cut(s) 220
FaeI CATG 1 cut(s) 50
FaiI YATR 7 cut(s) 48, 198, 273, 300, 385, 470, 570
FalI AAGNNNNNCTT 4 cut(s) 127, 159, 473, 505
FaqI GGGAC 2 cut(s) 57, 154
FatI CATG 1 cut(s) 46
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 50
HinfI GANTC 2 cut(s) 8, 392
HphI GGTGA 2 cut(s) 34, 324
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 295, 349, 513
Hpy188III TCNNGA 2 cut(s) 88, 281
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 251, 377
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 57, 190, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 120, 412
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 2 cut(s) 131, 508
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 1 cut(s) 512
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 2 cut(s) 148, 274
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 22, 421
MalI GATC 2 cut(s) 133, 510
MboI GATC 2 cut(s) 131, 508
MboII GAAGA 1 cut(s) 269
MluCI AATT 4 cut(s) 167, 185, 539, 545
MnlI CCTC 7 cut(s) 33, 110, 172, 175, 201, 204, 513
MseI TTAA 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 105, 120, 412
NdeII GATC 2 cut(s) 131, 508
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 22
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 8, 392
PkrI GCNGC 1 cut(s) 414
PshAI GACNNNNGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 412
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 2 cut(s) 131, 508
SetI ASST 6 cut(s) 29, 87, 414, 438, 532, 568
SfaNI GCATC 2 cut(s) 148, 274
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 167, 185, 539, 545
SsiI CCGC 2 cut(s) 121, 205
SspMI CTAG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 251, 377
TaiI ACGT 1 cut(s) 29
TasI AATT 4 cut(s) 167, 185, 539, 545
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 2 cut(s) 8, 392
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 342, 382
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 17, 479
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 342, 382
XapI RAATTY 1 cut(s) 539
XbaI TCTAGA 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.