MD11G1138500.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000371
Physical Location & Seq
Forward (+)
12748606 .. 12749154
549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138500.v1.1.491

Sequence Viewer

Length: 549 bp
ATGGTCGGACCCCTTGTGACCCTTGTGCCTTATGCTTTCTGCTTCCAACCCACGGACCAAGAGATCATCCGTTCCTTTCTTTACAGGATGGCGGTTAAGCGTGAGCTGTTACTGCCGCCATACAACGAGTATGTGCATGAGGAGGACCTCTTTGACTTCAAAGAGCCATGGGAGATTTGGGAAGAATATGGAGGAGATGACCACTTTAATCAAGACTTATATTTCTTCTGCGAGCTCGAGAGGTTATCCCCGACTGGTTTGCGCATCCGTCGCAACATTGGGGAAGGCATTTGGAGCGAAAAACAACCCACTAAGCTGGTTTACAATGAGGACGGACACCCTAATCCTATGGGGAGGAAGAAAATGTTCCTGTACGAGAATCGAGGGTCGGAGGAGCACGGAGGGTGGATTTTAGATGAATATAGTCTGCTTGTTGGTGCTGACGGCCGTGCTCAAACGGCCTCAAAGGATCGCTACGAATTTCCTTCTGTGATTTGCCGGCTGCGGAAGAATGACAAAAGTGGCGGGAAGAAGAAGAGAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

183

Amino Acids

21.46

Weight (kDa)

5.67

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 143 7.2e-20 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 263
AciI CCGC 4 cut(s) 92, 116, 505, 525
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 3 cut(s) 106, 235, 316
AluI AGCT 3 cut(s) 106, 235, 316
Alw21I GWGCWC 3 cut(s) 237, 399, 454
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 445, 459
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 8, 55, 145
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 8, 55, 145
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 3 cut(s) 237, 399, 454
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 82
BceAI ACGGC 3 cut(s) 432, 460, 474
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BisI GCNGC 2 cut(s) 116, 503
BlsI GCNGC 2 cut(s) 117, 504
Bme18I GGWCC 3 cut(s) 8, 55, 145
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 8, 55, 145
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 51, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 498
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 51, 167
BseGI GGATG 3 cut(s) 66, 93, 264
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 3 cut(s) 155, 207, 407
BseX3I CGGCCG 1 cut(s) 445
BseXI GCAGC 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 447, 461
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 3 cut(s) 237, 399, 454
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 2 cut(s) 447, 461
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 237, 399, 454
Bsp143I GATC 2 cut(s) 63, 469
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 4 cut(s) 92, 116, 505, 525
BspANI GGCC 2 cut(s) 447, 461
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 498
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 498
BssECI CCNNGG 2 cut(s) 51, 167
BssMI GATC 2 cut(s) 63, 469
BssT1I CCWWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 233, 500
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 2 cut(s) 51, 167
BstF5I GGATG 3 cut(s) 66, 93, 264
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 66, 472
BstMBI GATC 2 cut(s) 63, 469
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 112, 270, 294, 458
BstV1I GCAGC 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 316
BstZI CGGCCG 1 cut(s) 445
BsuRI GGCC 2 cut(s) 447, 461
BtgI CCRYGG 2 cut(s) 51, 167
BtsCI GGATG 3 cut(s) 66, 93, 264
Cac8I GCNNGC 2 cut(s) 233, 500
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 498
Cfr13I GGNCC 3 cut(s) 8, 55, 145
Csp6I GTAC 1 cut(s) 373
CviAII CATG 2 cut(s) 137, 168
CviJI RGCY 7 cut(s) 106, 166, 235, 316, 447, 461, 502
CviKI_1 RGCY 7 cut(s) 106, 166, 235, 316, 447, 461, 502
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 312
DpnI GATC 2 cut(s) 65, 471
DpnII GATC 2 cut(s) 63, 469
EaeI YGGCCR 1 cut(s) 445
EagI CGGCCG 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 235
EclXI CGGCCG 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 8, 55, 145
Eco52I CGGCCG 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 140, 171
FaiI YATR 9 cut(s) 33, 121, 132, 138, 169, 189, 220, 350, 423
FatI CATG 2 cut(s) 136, 167
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 2 cut(s) 116, 503
FokI GGATG 3 cut(s) 53, 100, 251
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 116, 503
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
GluI GCNGC 2 cut(s) 116, 503
HaeIII GGCC 2 cut(s) 447, 461
HapII CCGG 1 cut(s) 499
HhaI GCGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 140, 171
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 1 cut(s) 379
HpaII CCGG 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 8, 391
Hpy188III TCNNGA 2 cut(s) 212, 238
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 278, 495
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 270, 294, 458
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 2 cut(s) 140, 171
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 498
KroNI GCCGGC 1 cut(s) 500
Kzo9I GATC 2 cut(s) 63, 469
LmnI GCTCC 2 cut(s) 294, 394
LpnPI CCDG 5 cut(s) 70, 240, 302, 383, 512
Lsp1109I GCAGC 1 cut(s) 489
LweI GCATC 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 16, 108
MalI GATC 2 cut(s) 65, 471
MboI GATC 2 cut(s) 63, 469
MboII GAAGA 7 cut(s) 194, 217, 370, 520, 541, 544, 547
MhlI GDGCHC 3 cut(s) 237, 399, 454
MluCI AATT 1 cut(s) 479
MmeI TCCRAC 2 cut(s) 70, 369
MroNI GCCGGC 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 2 cut(s) 96, 207
MspI CCGG 1 cut(s) 499
MwoI GCNNNNNNNGC 4 cut(s) 112, 270, 294, 458
NaeI GCCGGC 1 cut(s) 500
NcoI CCATGG 1 cut(s) 167
NdeII GATC 2 cut(s) 63, 469
NgoMIV GCCGGC 1 cut(s) 498
NlaIII CATG 2 cut(s) 140, 171
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 236
PdiI GCCGGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 117, 504
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 3 cut(s) 8, 55, 145
PspPPI RGGWCCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 96, 207
SatI GCNGC 2 cut(s) 116, 503
Sau3AI GATC 2 cut(s) 63, 469
Sau96I GGNCC 3 cut(s) 8, 55, 145
SduI GDGCHC 3 cut(s) 237, 399, 454
SetI ASST 5 cut(s) 108, 150, 237, 245, 318
SfaNI GCATC 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 3 cut(s) 8, 55, 145
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 479
SsiI CCGC 4 cut(s) 92, 116, 505, 525
SstI GAGCTC 1 cut(s) 237
StyI CCWWGG 1 cut(s) 167
TaqI TCGA 2 cut(s) 237, 382
TasI AATT 1 cut(s) 479
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 96, 207
Tru9I TTAA 2 cut(s) 96, 207
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 5 cut(s) 59, 68, 257, 348, 414
VpaK11BI GGWCC 3 cut(s) 8, 55, 145
XapI RAATTY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XhoI CTCGAG 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.