Prupe.6G098300_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000371
Physical Location & Seq
Reverse (-)
6843896 .. 6844935
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G098300.1

Sequence Viewer

Length: 741 bp
ATGGCTAATTCGCGTAATGTGTCGTTAGCTTTCCACTTCCACCCCACAGATCAAGAAATCATACGTTCCATTCTCTACAAGATGGTGATTGAGAGAGAGCCTTTGAACCCGTCATACCACGGCATTGTTCATGACGAGGACCTCTTCGGCACCAAAGAACCATGGAAGATATGGGAAGACTATGGAAGAGATCAACTCCATGATCAAGACTTATACTTCATCTGCCAGCTCAAGAGGATAAATTACTGCAGTTCGCGCACCCATCGCCGGATTGGCTGCGAAGGGACTTGGAGCCAACGAGTAGCCCCCAAATTGATTTACGATGGAAACCCTAATCCTATTGGTAACGTAAGAAAGCTTCGGTATAAGAATCCAAAGTCAGAGCACAATGCTGAGTGGTTTTTGGATGAATATAGCCTTTTTGTAGGTGATGAAGGTCATGATCAAACTACTCCTGGTTTTGATTTTGTGGTTTGTCGATTGAGGAAGAATCATAATAAAATCAATGGCTATTTCTTGCTTGCTGCCAGGAGCCACAATGGCAACCAGGGGTTGACCATTATGCTCATCCACCGCGATTCACCGGAATCACCCACCCCTCTACCAACCCAACCTCACACAAGCACAAACAACTCAAAAACTCAATTCTCCTCCTACCCAAAGCTCGCTTGCAGGCCAAGCACATCAAATCCAAAACTCATTCTCCTATCCATCATGTTCAACAACCGGATTTTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

247

Amino Acids

28.56

Weight (kDa)

8.85

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccII CGCG 3 cut(s) 13, 256, 576
AciI CCGC 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 106, 721
AjnI CCWGG 3 cut(s) 454, 527, 546
AluBI AGCT 4 cut(s) 29, 229, 358, 664
AluI AGCT 4 cut(s) 29, 229, 358, 664
Alw21I GWGCWC 1 cut(s) 387
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 2 cut(s) 276, 524
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 97, 440, 573, 582
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 263, 511
BccI CCATC 4 cut(s) 76, 270, 317, 719
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 3 cut(s) 456, 529, 548
BclI TGATCA 2 cut(s) 202, 442
BfmI CTRYAG 1 cut(s) 247
BglI GCCNNNNNGGC 2 cut(s) 273, 540
BisI GCNGC 2 cut(s) 277, 525
BlsI GCNGC 2 cut(s) 278, 526
Bme1390I CCNGG 3 cut(s) 456, 529, 548
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 151, 293, 533
BmrFI CCNGG 3 cut(s) 456, 529, 548
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 118, 161, 547
BsaWI WCCGGW 2 cut(s) 583, 726
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 456, 529, 548
BseDI CCNNGG 3 cut(s) 118, 161, 547
BseGI GGATG 2 cut(s) 412, 567
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 640
BseXI GCAGC 2 cut(s) 263, 511
Bsh1236I CGCG 3 cut(s) 13, 256, 576
BshFI GGCC 1 cut(s) 676
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 3 cut(s) 268, 584, 727
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 4 cut(s) 49, 190, 202, 442
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 574
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 3 cut(s) 13, 256, 576
BspHI TCATGA 2 cut(s) 130, 439
BspLI GGNNCC 3 cut(s) 151, 293, 533
BspMAI CTGCAG 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 118, 161, 547
BssMI GATC 4 cut(s) 49, 190, 202, 442
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 3 cut(s) 456, 529, 548
Bst6I CTCTTC 2 cut(s) 149, 181
BstC8I GCNNGC 5 cut(s) 227, 522, 666, 670, 674
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 2 cut(s) 118, 161
BstF5I GGATG 2 cut(s) 412, 567
BstFNI CGCG 3 cut(s) 13, 256, 576
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 4 cut(s) 52, 193, 205, 445
BstMBI GATC 4 cut(s) 49, 190, 202, 442
BstMWI GCNNNNNNNGC 5 cut(s) 255, 264, 273, 540, 678
BstNI CCWGG 3 cut(s) 456, 529, 548
BstSCI CCNGG 3 cut(s) 454, 527, 546
BstSFI CTRYAG 1 cut(s) 247
BstUI CGCG 3 cut(s) 13, 256, 576
BstV1I GCAGC 2 cut(s) 263, 511
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 676
BtgI CCRYGG 2 cut(s) 118, 161
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 2 cut(s) 412, 567
Cac8I GCNNGC 5 cut(s) 227, 522, 666, 670, 674
CciI TCATGA 2 cut(s) 130, 439
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 139
CviAII CATG 5 cut(s) 131, 162, 200, 440, 715
DdeI CTNAG 1 cut(s) 393
DpnI GATC 4 cut(s) 51, 192, 204, 444
DpnII GATC 4 cut(s) 49, 190, 202, 442
Eam1104I CTCTTC 2 cut(s) 149, 181
EarI CTCTTC 2 cut(s) 149, 181
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 454, 527, 546
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 5 cut(s) 134, 165, 203, 443, 718
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 130, 161, 199, 439, 714
FbaI TGATCA 2 cut(s) 202, 442
Fnu4HI GCNGC 2 cut(s) 277, 525
FokI GGATG 2 cut(s) 419, 554
Fsp4HI GCNGC 2 cut(s) 277, 525
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 277, 525
HaeIII GGCC 1 cut(s) 676
HapII CCGG 3 cut(s) 268, 584, 727
HhaI GCGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 134, 165, 203, 443, 718
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 4 cut(s) 370, 490, 578, 587
HpaII CCGG 3 cut(s) 268, 584, 727
HphI GGTGA 4 cut(s) 97, 440, 573, 582
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 5 cut(s) 53, 131, 206, 232, 440
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 2 cut(s) 275, 428
HpyCH4IV ACGT 2 cut(s) 64, 348
HpyCH4V TGCA 2 cut(s) 249, 672
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 264, 273, 540, 678
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 64, 348
Hsp92II CATG 5 cut(s) 134, 165, 203, 443, 718
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 2 cut(s) 202, 442
Kzo9I GATC 4 cut(s) 49, 190, 202, 442
LmnI GCTCC 2 cut(s) 291, 531
Lsp1109I GCAGC 2 cut(s) 263, 511
MaeII ACGT 2 cut(s) 64, 348
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 51, 192, 204, 444
MboI GATC 4 cut(s) 49, 190, 202, 442
MboII GAAGA 5 cut(s) 136, 178, 188, 198, 499
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 4 cut(s) 7, 241, 311, 644
MnlI CCTC 7 cut(s) 130, 152, 228, 477, 609, 624, 661
MseI TTAA 1 cut(s) 739
MspI CCGG 3 cut(s) 268, 584, 727
MspR9I CCNGG 3 cut(s) 456, 529, 548
MvaI CCWGG 3 cut(s) 456, 529, 548
MvnI CGCG 3 cut(s) 13, 256, 576
MwoI GCNNNNNNNGC 5 cut(s) 255, 264, 273, 540, 678
NcoI CCATGG 1 cut(s) 161
NdeII GATC 4 cut(s) 49, 190, 202, 442
NlaIII CATG 5 cut(s) 134, 165, 203, 443, 718
NlaIV GGNNCC 3 cut(s) 151, 293, 533
PagI TCATGA 2 cut(s) 130, 439
PfeI GAWTC 4 cut(s) 370, 490, 578, 587
PkrI GCNGC 2 cut(s) 278, 526
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 454, 527, 546
PspGI CCWGG 3 cut(s) 454, 527, 546
PspN4I GGNNCC 3 cut(s) 151, 293, 533
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PstI CTGCAG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 739
SatI GCNGC 2 cut(s) 277, 525
Sau3AI GATC 4 cut(s) 49, 190, 202, 442
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 456, 529, 548
SduI GDGCHC 1 cut(s) 387
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 7, 241, 311, 644
SsiI CCGC 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 454, 527, 546
StyI CCWWGG 1 cut(s) 161
TaiI ACGT 2 cut(s) 67, 351
TaqI TCGA 1 cut(s) 478
TasI AATT 4 cut(s) 7, 241, 311, 644
TfiI GAWTC 4 cut(s) 370, 490, 578, 587
Tru1I TTAA 1 cut(s) 739
Tru9I TTAA 1 cut(s) 739
TseI GCWGC 2 cut(s) 276, 524
TspDTI ATGAA 4 cut(s) 119, 208, 423, 447
VpaK11BI GGWCC 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 2 cut(s) 168, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.