MD15G1393000.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000371
Physical Location & Seq
Reverse (-)
49012222 .. 49013214
993 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1393000.v1.1.491

Sequence Viewer

Length: 993 bp
ATGGGTTTCTATGAAAATCCGCTACTGGGTTCTAATGGTATGCCGCTGGGTTTTCGGTTTCATCCGACCGATCAGGATTTGATCAGTTTCTTCCTTTATCACAGAGTCCTCCACAGAGAGTCGTTAATGGCGTACTGCAACAATTTTAAGCTTATCTATGAGTTCGACCTCTTCGGCAAGACTTCACCGTGGGTGGTTTGGGAGAACTTTAGCGGACCGTGCCTTGACGGTCAAGATTTGTACTTCTTCTGCCAACTCAAGAATAGAAGCGAGGCGCGTATCAAACGTGAAATTGATGCCGGAGGAACGTGGAGTGAATCCAATTCAAAGCTGGTTAAGGATTTGCAGAATGAAAAACCTATTGGGAAAAAGAGGAATTTGCGGTATGAGAAGGAAGGGTGTGAGCACGACGGTGACTGGCTCTTGGAAGAGTACAGTATTCTTCCTAGTGTAGTTGGTGGCGCTGATGACTCCGATCACGAAATTGGAAAGGTGGTTCTCTGCCGACTTAAAAAGAATTCCAGGAGTGGAAACAAGAAGAATTGTTCGAATTCAACCCAACATGTGAACGAGGAGTGGGCAAAAAAGAGAGCAAGAAAAGAAGTCAAGGAGAAGCCGGTGAAAAAGAGAGCAAGAAAAGAAGTCAAGGAGAAGCCGGTGAAAAAGAGAGCAAGAAAAGAAGCGAACGAGAAGCCGGCGAAAACAAAGGCAAGAAACGACGTGGGATCACAAAATACTACTAGTATGATCGCCCATACAATCGATGAAAACAATTATAAGATGATTAGTGATGCTACTAACGATGATCAGCAGTGCATAAGTAACATGGACTGTAGTACGATGCCCGCAAATTTTTCTGACCATGATTATGTGCCGATAAGCTTGGTCAGCGAAGGTGGTGAGCCGCTTTTGAAAGATGAAGACTTTCTTTTTGAGAACAGCGAAGAAATGTTTTTTGACCTCGACGATTTGTTTGCACCATTAGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

331

Amino Acids

37.97

Weight (kDa)

5.99

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 147 4.8e-19 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AccII CGCG 1 cut(s) 277
AciI CCGC 6 cut(s) 20, 44, 213, 382, 846, 905
AclWI GGATC 1 cut(s) 733
AcsI RAATTY 4 cut(s) 376, 517, 550, 850
AfaI GTAC 4 cut(s) 134, 242, 434, 838
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 3 cut(s) 327, 555, 913
AhlI ACTAGT 1 cut(s) 740
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 521
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AleI CACNNNNGTG 1 cut(s) 411
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 151, 331, 882
AluI AGCT 3 cut(s) 151, 331, 882
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 1 cut(s) 733
ApoI RAATTY 4 cut(s) 376, 517, 550, 850
ArsI GACNNNNNNTTYG 4 cut(s) 914, 946, 956, 988
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 2 cut(s) 277, 464
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 177, 425, 631, 670, 911
AsuII TTCGAA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 523
BclI TGATCA 2 cut(s) 81, 805
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 2 cut(s) 447, 741
BfmI CTRYAG 1 cut(s) 832
BfoI RGCGCY 1 cut(s) 465
BisI GCNGC 2 cut(s) 44, 905
BlsI GCNGC 2 cut(s) 45, 906
Bme1390I CCNGG 1 cut(s) 523
Bme18I GGWCC 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 523
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 286, 781, 831
BmuI ACTGGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 927
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 3 cut(s) 616, 655, 694
Bse1I ACTGG 2 cut(s) 30, 422
BseBI CCWGG 1 cut(s) 523
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 30, 422
BseRI GAGGAG 1 cut(s) 587
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 762
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 4 cut(s) 300, 617, 656, 695
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 6 cut(s) 70, 81, 475, 725, 747, 805
BspACI CCGC 6 cut(s) 20, 44, 213, 382, 846, 905
BspDI ATCGAT 1 cut(s) 762
BspFNI CGCG 1 cut(s) 277
BspPI GGATC 1 cut(s) 733
BspT104I TTCGAA 1 cut(s) 548
BsrFI RCCGGY 3 cut(s) 616, 655, 694
BsrI ACTGG 2 cut(s) 30, 422
BssAI RCCGGY 3 cut(s) 616, 655, 694
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 6 cut(s) 70, 81, 475, 725, 747, 805
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 6 cut(s) 189, 219, 230, 413, 437, 833
Bst6I CTCTTC 2 cut(s) 176, 423
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 696, 846
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 2 cut(s) 277, 464
BstKTI GATC 6 cut(s) 73, 84, 478, 728, 750, 808
BstMBI GATC 6 cut(s) 70, 81, 475, 725, 747, 805
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 219, 888
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 521
BstSFI CTRYAG 1 cut(s) 832
BstUI CGCG 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 927
Bsu15I ATCGAT 1 cut(s) 762
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 2 cut(s) 696, 846
CfoI GCGC 2 cut(s) 277, 464
Cfr10I RCCGGY 3 cut(s) 616, 655, 694
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 762
CpoI CGGWCCG 1 cut(s) 215
Csp6I GTAC 4 cut(s) 133, 241, 433, 837
CspI CGGWCCG 1 cut(s) 215
CviAII CATG 3 cut(s) 563, 826, 863
CviJI RGCY 8 cut(s) 151, 331, 421, 616, 655, 694, 882, 904
CviKI_1 RGCY 8 cut(s) 151, 331, 421, 616, 655, 694, 882, 904
CviQI GTAC 4 cut(s) 133, 241, 433, 837
DpnI GATC 6 cut(s) 72, 83, 477, 727, 749, 807
DpnII GATC 6 cut(s) 70, 81, 475, 725, 747, 805
Eam1104I CTCTTC 2 cut(s) 176, 423
EarI CTCTTC 2 cut(s) 176, 423
Eco47I GGWCC 1 cut(s) 215
EcoRI GAATTC 2 cut(s) 517, 550
EcoRII CCWGG 1 cut(s) 521
FaeI CATG 3 cut(s) 566, 829, 866
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 3 cut(s) 562, 825, 862
FauI CCCGC 1 cut(s) 853
FbaI TGATCA 2 cut(s) 81, 805
Fnu4HI GCNGC 2 cut(s) 44, 905
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 44, 905
FspBI CTAG 2 cut(s) 447, 741
GlaI GCGC 2 cut(s) 276, 463
GluI GCNGC 2 cut(s) 44, 905
GsaI CCCAGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 465
HapII CCGG 4 cut(s) 300, 617, 656, 695
HhaI GCGC 2 cut(s) 277, 464
Hin1II CATG 3 cut(s) 566, 829, 866
Hin6I GCGC 2 cut(s) 275, 462
HinP1I GCGC 2 cut(s) 275, 462
HindIII AAGCTT 2 cut(s) 149, 880
HinfI GANTC 4 cut(s) 105, 119, 317, 470
HpaII CCGG 4 cut(s) 300, 617, 656, 695
HphI GGTGA 5 cut(s) 177, 425, 631, 670, 911
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 66, 475, 859
Hpy188III TCNNGA 4 cut(s) 74, 233, 259, 479
Hpy8I GTNNAC 1 cut(s) 568
Hpy99I CGWCG 3 cut(s) 413, 722, 968
HpyAV CCTTC 3 cut(s) 385, 389, 887
HpyCH4III ACNGT 6 cut(s) 189, 219, 230, 413, 437, 833
HpyCH4IV ACGT 3 cut(s) 286, 308, 720
HpyCH4V TGCA 4 cut(s) 138, 346, 816, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 888
HpySE526I ACGT 3 cut(s) 286, 308, 720
Hsp92II CATG 3 cut(s) 566, 829, 866
HspAI GCGC 2 cut(s) 275, 462
KroI GCCGGC 1 cut(s) 694
KroNI GCCGGC 1 cut(s) 696
Ksp22I TGATCA 2 cut(s) 81, 805
Kzo9I GATC 6 cut(s) 70, 81, 475, 725, 747, 805
LweI GCATC 3 cut(s) 286, 781, 831
MaeI CTAG 2 cut(s) 447, 741
MaeII ACGT 3 cut(s) 286, 308, 720
MaeIII GTNAC 2 cut(s) 413, 821
MalI GATC 6 cut(s) 72, 83, 477, 727, 749, 807
MboI GATC 6 cut(s) 70, 81, 475, 725, 747, 805
MboII GAAGA 8 cut(s) 82, 163, 238, 434, 440, 550, 932, 956
MhlI GDGCHC 1 cut(s) 408
MlyI GAGTC 3 cut(s) 114, 128, 464
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 7 cut(s) 119, 179, 265, 296, 366, 565, 971
MroNI GCCGGC 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 4 cut(s) 125, 147, 336, 510
MslI CAYNNNNRTG 2 cut(s) 411, 867
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 4 cut(s) 300, 617, 656, 695
MspR9I CCNGG 1 cut(s) 523
MvaI CCWGG 1 cut(s) 523
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 219, 888
NaeI GCCGGC 1 cut(s) 696
NdeII GATC 6 cut(s) 70, 81, 475, 725, 747, 805
NgoMIV GCCGGC 1 cut(s) 694
NlaIII CATG 3 cut(s) 566, 829, 866
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 411
PciI ACATGT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 521
PkrI GCNGC 2 cut(s) 45, 906
PleI GAGTC 3 cut(s) 113, 127, 464
PpsI GAGTC 3 cut(s) 113, 127, 464
PscI ACATGT 1 cut(s) 562
PsiI TTATAA 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 521
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 4 cut(s) 134, 242, 434, 838
RsaNI GTAC 4 cut(s) 133, 241, 433, 837
RseI CAYNNNNRTG 2 cut(s) 411, 867
Rsr2I CGGWCCG 1 cut(s) 215
RsrII CGGWCCG 1 cut(s) 215
SaqAI TTAA 4 cut(s) 125, 147, 336, 510
SatI GCNGC 2 cut(s) 44, 905
Sau3AI GATC 6 cut(s) 70, 81, 475, 725, 747, 805
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 3 cut(s) 114, 128, 464
ScrFI CCNGG 1 cut(s) 523
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 286, 781, 831
SfcI CTRYAG 1 cut(s) 832
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 411, 867
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 740
SsiI CCGC 6 cut(s) 20, 44, 213, 382, 846, 905
SspMI CTAG 2 cut(s) 447, 741
StyD4I CCNGG 1 cut(s) 521
TaaI ACNGT 6 cut(s) 189, 219, 230, 413, 437, 833
TaiI ACGT 3 cut(s) 289, 311, 723
TaqI TCGA 4 cut(s) 165, 548, 762, 963
TaqII GACCGA 1 cut(s) 83
TatI WGTACW 2 cut(s) 240, 432
TauI GCSGC 2 cut(s) 46, 907
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 4 cut(s) 125, 147, 336, 510
Tru9I TTAA 4 cut(s) 125, 147, 336, 510
TscAI CASTG 1 cut(s) 818
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 27, 50, 366, 780, 933
TspRI CASTG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 4 cut(s) 376, 517, 550, 850
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 447, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.