Rh1BG128800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000371
Physical Location & Seq
Forward (+)
21709292 .. 21710215
924 bp
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UTR
Exon/CDS
Intron
Rh1BG128800.1

Sequence Viewer

Length: 159 bp
ATGGATCATGCCTACATCAACTCTGATGAATTCAGCAACTACAACTTTGGAGATGAGTTCTTGTCGGAAGGGGATGACATCGATACAGCTGATATACTACCACTCTCATCATCATTCCCACAGCTGCTTGGAGATCAGAATCATGAATGTTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.84

Weight (kDa)

4.05

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 29
AluBI AGCT 2 cut(s) 89, 124
AluI AGCT 2 cut(s) 89, 124
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 29
BbvI GCAGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 81
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 81
Bsp143I GATC 2 cut(s) 4, 133
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 142
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 133
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 7, 136
BstMBI GATC 2 cut(s) 4, 133
BstV1I GCAGC 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 79
CciI TCATGA 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 81
CviAII CATG 2 cut(s) 8, 143
CviJI RGCY 2 cut(s) 89, 124
CviKI_1 RGCY 2 cut(s) 89, 124
DpnI GATC 2 cut(s) 6, 135
DpnII GATC 2 cut(s) 4, 133
EcoRI GAATTC 1 cut(s) 29
FaeI CATG 2 cut(s) 11, 146
FaiI YATR 3 cut(s) 9, 95, 144
FatI CATG 2 cut(s) 7, 142
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 11, 146
HinfI GANTC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 25, 67, 138, 154
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 11, 146
Kzo9I GATC 2 cut(s) 4, 133
Lsp1109I GCAGC 1 cut(s) 111
MalI GATC 2 cut(s) 6, 135
MboI GATC 2 cut(s) 4, 133
MluCI AATT 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 89, 124
NdeII GATC 2 cut(s) 4, 133
NlaIII CATG 2 cut(s) 11, 146
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 126
PvuII CAGCTG 2 cut(s) 89, 124
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 4, 133
SetI ASST 2 cut(s) 91, 126
SgeI CNNG 4 cut(s) 20, 73, 140, 155
Sse9I AATT 1 cut(s) 29
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 139
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 42, 159
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.