Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Reverse (-)

14732744 .. 14737035

Gene Structure 4292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGGATTCCACACCTGGAGGCTCTTACCAACTCGACCACCTTGCCGCAGGGCTTCCGATTCCATCCCACAGAAGAGGAGCTGGTGAATCACTATTTGAAGAAGAAGATTCACGGCGAAGATTCCGGACATGTCAATAGCTTAATTCCTGAAATTGACTTCATCAAGTTCGAACCATGGGACTTACCTAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

65

Amino Acids

7.48

Weight (kDa)

5.61

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 65	6.8e-15	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	2 cut(s)	82, 141
AluI	AGCT	2 cut(s)	82, 141
Aor13HI	TCCGGA	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	171
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	1 cut(s)	47
BspEI	TCCGGA	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	64
CviAII	CATG	2 cut(s)	131, 177
CviJI	RGCY	4 cut(s)	23, 54, 82, 141
CviKI_1	RGCY	4 cut(s)	23, 54, 82, 141
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	134, 180
FaiI	YATR	2 cut(s)	132, 178
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	130, 176
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	134, 180
HinfI	GANTC	5 cut(s)	7, 60, 88, 109, 122
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	126, 149
Hsp92II	CATG	2 cut(s)	134, 180
Kpn2I	TCCGGA	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	2, 29, 35, 68, 139, 162
MaeI	CTAG	1 cut(s)	189
MboII	GAAGA	5 cut(s)	86, 112, 115, 118, 131
MluCI	AATT	2 cut(s)	144, 153
MnlI	CCTC	2 cut(s)	13, 70
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	176
NlaIII	CATG	2 cut(s)	134, 180
NspI	RCATGY	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	171
PciI	ACATGT	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	7, 60, 88, 109, 122
PkrI	GCNGC	1 cut(s)	48
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	18, 44, 84, 143, 190
SfuI	TTCGAA	1 cut(s)	171
Sse9I	AATT	2 cut(s)	144, 153
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	2 cut(s)	35, 171
TasI	AATT	2 cut(s)	144, 153
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	5 cut(s)	7, 60, 88, 109, 122
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.