Prupe.6G098400_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000371
Physical Location & Seq
Reverse (-)
6852172 .. 6852417
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G098400.1

Sequence Viewer

Length: 246 bp
ATGGCTAATTCGCGTCATGTGTCGTTAGCATTCCACTTCCCCCCCACAGATCAAGAAATCATCCGTTCCATTCTTTACAAGATGCTGGTTGAGAGAGAGCCTTTGAACCTGTCATACAAAGGCATTGTTCATGACAAGGACCTCTTCGGCACCAAAGAACCATGGAAGATATGGGAAGACTATGGAGGAGATCAACTCCATGATCAAGACTTATACTTTCTCTGCCAGCTCAGCTCAAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

82

Amino Acids

9.54

Weight (kDa)

5.7

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccII CGCG 1 cut(s) 13
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 229, 234
AluI AGCT 2 cut(s) 229, 234
AspS9I GGNCC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 183
BclI TGATCA 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 180, 212
Bpu1102I GCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 49, 190, 202
Bsp1720I GCTNAGC 1 cut(s) 230
Bsp19I CCATGG 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 49, 190, 202
BssT1I CCWWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 3 cut(s) 52, 193, 205
BstMBI GATC 3 cut(s) 49, 190, 202
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstUI CGCG 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 2
CviAII CATG 4 cut(s) 17, 131, 162, 200
CviJI RGCY 4 cut(s) 5, 100, 229, 234
CviKI_1 RGCY 4 cut(s) 5, 100, 229, 234
DdeI CTNAG 1 cut(s) 230
DpnI GATC 3 cut(s) 51, 192, 204
DpnII GATC 3 cut(s) 49, 190, 202
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 20, 134, 165, 203
FaiI YATR 8 cut(s) 18, 115, 132, 163, 172, 183, 201, 214
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 4 cut(s) 16, 130, 161, 199
FbaI TGATCA 1 cut(s) 202
FokI GGATG 1 cut(s) 47
HgaI GACGC 1 cut(s) 2
Hin1II CATG 4 cut(s) 20, 134, 165, 203
Hpy188III TCNNGA 4 cut(s) 53, 131, 206, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 4 cut(s) 20, 134, 165, 203
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 49, 190, 202
LpnPI CCDG 3 cut(s) 71, 122, 239
LweI GCATC 1 cut(s) 72
MalI GATC 3 cut(s) 51, 192, 204
MboI GATC 3 cut(s) 49, 190, 202
MboII GAAGA 3 cut(s) 136, 178, 188
MluCI AATT 1 cut(s) 7
MnlI CCTC 3 cut(s) 152, 179, 233
MseI TTAA 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 231
NcoI CCATGG 1 cut(s) 161
NdeII GATC 3 cut(s) 49, 190, 202
NlaIII CATG 4 cut(s) 20, 134, 165, 203
NlaIV GGNNCC 1 cut(s) 151
PagI TCATGA 1 cut(s) 130
PctI GAATGC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
SaqAI TTAA 1 cut(s) 244
Sau3AI GATC 3 cut(s) 49, 190, 202
Sau96I GGNCC 1 cut(s) 139
SetI ASST 5 cut(s) 111, 144, 231, 236, 244
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 161
TasI AATT 1 cut(s) 7
Tru1I TTAA 1 cut(s) 244
Tru9I TTAA 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.