Rh2AG321700
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000371
Physical Location & Seq
Reverse (-)
46174715 .. 46175707
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG321700.1

Sequence Viewer

Length: 618 bp
ATGTTTAGGGGAGCTGAATTGTGCAACCAGGACTTGTTCTTCTTTACACAATTGAAGAAGGTGAACCCCAAGGGCTCACGCATTGGCCGCAAGGTTGGGTCCGGCGGTACTTGGAGCGAAGGAGACGTCTCCAAGCCCATTGTTGATGACAGAACTGGAAACCAAATTGGCCGGAAGAGGAAGTTGCGGTATGAGAAAGTTGGCTCTCCACACCATGCTTGTTGGTATTTGGATGAGTATAGTCTGCTTGATGCTGATATTGGAGATTATGTCATTTGTCGACTCCGGAAGAATGACAAGTTAGCAGCAGCAGCATTCTCATCTGGTGAACCAATCCACAGCAGGAAGAGGAAGTCAACTCCTTCCACGACTGCAGCAGAATCAAAACATCCTCCCGCTACTCCACAAGAATCAAAACATCCTTCCACCACTGCGGGAGAATCAAAACCGGAGGAGGACTCATCAAAGGCAAAGCGCAAGCGCACTACCGGGCTCACACAAGTAGAGGAAGCTGCAGCAGATGTGTTGATGAATATGGCCAACAGCACCCTCAACAACAACACATTGAAACTATTTGGTATTGAAATTGGTTCTACTCCTACTATAGGAGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

205

Amino Acids

22.42

Weight (kDa)

9.32

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 82 4.2e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 280
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 5 cut(s) 88, 105, 187, 396, 434
AcoI YGGCCR 3 cut(s) 85, 169, 537
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 3 cut(s) 55, 568, 584
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 14, 512
AluI AGCT 2 cut(s) 14, 512
Alw26I GTCTC 2 cut(s) 117, 133
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 3 cut(s) 85, 169, 537
ApeKI GCWGC 6 cut(s) 305, 308, 311, 374, 512, 515
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 2 cut(s) 477, 483
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 73, 338
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 539
BanII GRGCYC 2 cut(s) 77, 495
BbvI GCAGC 6 cut(s) 317, 320, 323, 386, 499, 527
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 117, 133
BfmI CTRYAG 3 cut(s) 372, 513, 603
BisI GCNGC 7 cut(s) 88, 306, 309, 312, 375, 513, 516
BlsI GCNGC 7 cut(s) 89, 307, 310, 313, 376, 514, 517
Bme1390I CCNGG 2 cut(s) 29, 490
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 29, 490
BmsI GCATC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpuMI CCSGG 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 2 cut(s) 285, 448
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 3 cut(s) 238, 388, 418
BseLI CCNNNNNNNGG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 6 cut(s) 317, 320, 323, 386, 499, 527
BshFI GGCC 3 cut(s) 87, 171, 539
BsiSI CCGG 5 cut(s) 102, 172, 286, 449, 489
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 2 cut(s) 117, 133
BsmBI CGTCTC 2 cut(s) 117, 133
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 3 cut(s) 87, 171, 539
Bsp1286I GDGCHC 2 cut(s) 77, 495
Bsp13I TCCGGA 1 cut(s) 285
BspACI CCGC 5 cut(s) 88, 105, 187, 396, 434
BspANI GGCC 3 cut(s) 87, 171, 539
BspEI TCCGGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 2 cut(s) 376, 517
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 170, 341
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 479
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 238, 388, 418
BstHHI GCGC 2 cut(s) 477, 483
BstMAI GTCTC 2 cut(s) 117, 133
BstMWI GCNNNNNNNGC 2 cut(s) 87, 311
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 488
BstSFI CTRYAG 3 cut(s) 372, 513, 603
BstV1I GCAGC 6 cut(s) 317, 320, 323, 386, 499, 527
BsuRI GGCC 3 cut(s) 87, 171, 539
BtsCI GGATG 3 cut(s) 238, 388, 418
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 479
CfoI GCGC 2 cut(s) 477, 483
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 215
CviJI RGCY 9 cut(s) 14, 75, 87, 136, 171, 204, 493, 512, 539
CviKI_1 RGCY 9 cut(s) 14, 75, 87, 136, 171, 204, 493, 512, 539
CviQI GTAC 1 cut(s) 108
EaeI YGGCCR 3 cut(s) 85, 169, 537
Eam1104I CTCTTC 2 cut(s) 170, 341
EarI CTCTTC 2 cut(s) 170, 341
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 77, 495
Eco47I GGWCC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 77, 495
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 2 cut(s) 117, 133
FaeI CATG 1 cut(s) 218
FaiI YATR 6 cut(s) 192, 216, 240, 270, 536, 605
FatI CATG 1 cut(s) 214
FauI CCCGC 2 cut(s) 403, 427
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 7 cut(s) 88, 306, 309, 312, 375, 513, 516
FokI GGATG 3 cut(s) 245, 375, 405
FriOI GRGCYC 2 cut(s) 77, 495
Fsp4HI GCNGC 7 cut(s) 88, 306, 309, 312, 375, 513, 516
GlaI GCGC 2 cut(s) 476, 482
GluI GCNGC 7 cut(s) 88, 306, 309, 312, 375, 513, 516
HaeIII GGCC 3 cut(s) 87, 171, 539
HapII CCGG 5 cut(s) 102, 172, 286, 449, 489
HhaI GCGC 2 cut(s) 477, 483
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 2 cut(s) 475, 481
HinP1I GCGC 2 cut(s) 475, 481
HincII GTYRAC 2 cut(s) 281, 357
HindII GTYRAC 2 cut(s) 281, 357
HinfI GANTC 5 cut(s) 282, 380, 410, 440, 458
HpaII CCGG 5 cut(s) 102, 172, 286, 449, 489
HphI GGTGA 2 cut(s) 73, 338
Hpy166II GTNNAC 4 cut(s) 64, 281, 329, 357
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 4 cut(s) 64, 281, 329, 357
HpyAV CCTTC 4 cut(s) 52, 113, 372, 432
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 24, 374, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 311
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 2 cut(s) 475, 481
Kpn2I TCCGGA 1 cut(s) 285
LmnI GCTCC 2 cut(s) 11, 114
Lsp1109I GCAGC 6 cut(s) 317, 320, 323, 386, 499, 527
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 126
MboII GAAGA 5 cut(s) 31, 67, 187, 301, 358
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 77, 495
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 4 cut(s) 17, 50, 165, 585
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 2 cut(s) 276, 452
MnlI CCTC 8 cut(s) 171, 342, 402, 445, 448, 499, 560, 602
Mox20I TGGCCA 1 cut(s) 539
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 5 cut(s) 102, 172, 286, 449, 489
MspR9I CCNGG 2 cut(s) 29, 490
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 87, 311
NciI CCSGG 1 cut(s) 490
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 100
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 3 cut(s) 380, 410, 440
PkrI GCNGC 7 cut(s) 89, 307, 310, 313, 376, 514, 517
PleI GAGTC 2 cut(s) 276, 452
PpsI GAGTC 2 cut(s) 276, 452
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 2 cut(s) 376, 517
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 279
SatI GCNGC 7 cut(s) 88, 306, 309, 312, 375, 513, 516
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 2 cut(s) 276, 452
ScrFI CCNGG 2 cut(s) 29, 490
SduI GDGCHC 2 cut(s) 77, 495
SetI ASST 5 cut(s) 16, 63, 96, 129, 514
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 3 cut(s) 372, 513, 603
SinI GGWCC 1 cut(s) 99
Sse9I AATT 4 cut(s) 17, 50, 165, 585
SsiI CCGC 5 cut(s) 88, 105, 187, 396, 434
StyD4I CCNGG 2 cut(s) 27, 488
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 280
TasI AATT 4 cut(s) 17, 50, 165, 585
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 380, 410, 440
TscAI CASTG 1 cut(s) 436
TseI GCWGC 6 cut(s) 305, 308, 311, 374, 512, 515
TspDTI ATGAA 1 cut(s) 545
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 280
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.