Rh2BG655200
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000371
Physical Location & Seq
Forward (+)
87295553 .. 87295729
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG655200.1

Sequence Viewer

Length: 177 bp
ATGTCAACTGTAATGCCAACGGGTTTCAGGTTCCATCCGAAGGATCACGAGTTGGTGAGCTATTACCTGTATAGCAAGGTGAATGGGGAAGAGTCGGTAATTCCACCACCAACCTATAGGATGCCAGAGGTCGACGTCTACGGTGAAGATTTGGGAGAGATTCGGACAGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

58

Amino Acids

6.71

Weight (kDa)

5.14

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 50 5e-08 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccI GTMKAC 2 cut(s) 132, 138
AclWI GGATC 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 67, 91, 155
BauI CACGAG 1 cut(s) 47
BccI CCATC 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 34, 126
BseLI CCNNNNNNNGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp143I GATC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 1 cut(s) 51
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 10, 143
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 135
BstF5I GGATG 2 cut(s) 34, 126
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 34, 126
CviJI RGCY 1 cut(s) 60
CviKI_1 RGCY 1 cut(s) 60
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
FaiI YATR 2 cut(s) 72, 117
FblI GTMKAC 2 cut(s) 132, 138
FokI GGATG 2 cut(s) 21, 133
Hin1I GRCGYC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 6, 133
HindII GTYRAC 2 cut(s) 6, 133
HinfI GANTC 2 cut(s) 92, 160
HphI GGTGA 3 cut(s) 67, 91, 155
Hpy166II GTNNAC 3 cut(s) 6, 133, 139
Hpy188I TCNGA 2 cut(s) 39, 165
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 3 cut(s) 6, 133, 139
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 10, 143
HpyCH4IV ACGT 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 13, 80, 138
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 101, 158
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 121
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 160
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 101
SetI ASST 8 cut(s) 32, 62, 69, 81, 116, 132, 138, 176
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 115
SgeI CNNG 7 cut(s) 33, 40, 59, 61, 79, 88, 137
Sse9I AATT 1 cut(s) 99
TaaI ACNGT 2 cut(s) 10, 143
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 99
TfiI GAWTC 1 cut(s) 160
XmiI GTMKAC 2 cut(s) 132, 138
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.