pycom03g04810
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000371
Physical Location & Seq
Forward (+)
3736364 .. 3736951
588 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04810.2

Sequence Viewer

Length: 477 bp
ATGAAAAAAGAAGATGATCAAGTGGTATCAAAAGGTTCATCATTACAGAATATCAATGTGATCAATGCCATTGAAGAGGAGGCACCACAAGGCAGTTCTTTCTTAGGTAGTGAGATTGTAGTCGCGATTGAGATCAATAAGTTCACCGATGGGGATGATGTTGCTTACAATTATGATCTCTCTGATGAAACATTCACCGTTGATGAATTATTGTCTATGCCAGAAGCTTCCCGGATCGTTCTGGTGAAGCGAAAGCTTGGGATCCAAGTTCGTTGGACAAATATTGGCTTGTTGGATCTTGAAACCCAACAAGACCCTTTTCCGACTATATCTGGTATGTTACCTTATTTAGAGGAAGCTTGCAATCCAAGTACCATTGAGAATGTGGGCGACCAATCCTTATTCGACATGAACCATTGCAATAACTCGTTTATGGATGATCAGTTCATGCCACCATATTATACAAGTTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

4.05

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccII CGCG 1 cut(s) 125
AclWI GGATC 4 cut(s) 242, 256, 269, 303
AfaI GTAC 1 cut(s) 373
AgsI TTSAA 2 cut(s) 74, 302
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 227, 256, 359
AluI AGCT 3 cut(s) 227, 256, 359
AlwI GGATC 4 cut(s) 242, 256, 269, 303
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 136, 187, 256
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 82
BccI CCATC 1 cut(s) 143
BclI TGATCA 3 cut(s) 16, 60, 439
BcnI CCSGG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 84, 263
BmrFI CCNGG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 415
Bse8I GATNNNNATC 1 cut(s) 131
BseGI GGATG 2 cut(s) 160, 442
BseJI GATNNNNATC 1 cut(s) 131
BseMI GCAATG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 232
Bsp143I GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
Bsp68I TCGCGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 84, 263
BspPI GGATC 4 cut(s) 242, 256, 269, 303
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 415
BssMI GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 160, 442
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 8 cut(s) 19, 63, 135, 178, 237, 264, 298, 442
BstMBI GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 261, 295
BstYI RGATCY 2 cut(s) 261, 295
BtsCI GGATG 2 cut(s) 160, 442
BtuMI TCGCGA 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 372
CviAII CATG 2 cut(s) 409, 448
CviJI RGCY 4 cut(s) 227, 256, 288, 359
CviKI_1 RGCY 4 cut(s) 227, 256, 288, 359
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 103
DpnI GATC 8 cut(s) 18, 62, 134, 177, 236, 263, 297, 441
DpnII GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
FaeI CATG 2 cut(s) 412, 451
FatI CATG 2 cut(s) 408, 447
FbaI TGATCA 3 cut(s) 16, 60, 439
FokI GGATG 2 cut(s) 167, 449
HapII CCGG 1 cut(s) 232
Hin1II CATG 2 cut(s) 412, 451
HindIII AAGCTT 3 cut(s) 225, 254, 357
HpaII CCGG 1 cut(s) 232
HphI GGTGA 3 cut(s) 136, 187, 256
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 2 cut(s) 184, 324
Hpy188III TCNNGA 2 cut(s) 124, 299
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 363, 420
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 2 cut(s) 412, 451
Ksp22I TGATCA 3 cut(s) 16, 60, 439
Kzo9I GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
LpnPI CCDG 4 cut(s) 227, 234, 245, 318
MaeIII GTNAC 1 cut(s) 339
MalI GATC 8 cut(s) 18, 62, 134, 177, 236, 263, 297, 441
MboI GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
MboII GAAGA 2 cut(s) 23, 86
MflI RGATCY 2 cut(s) 261, 295
MluCI AATT 2 cut(s) 169, 206
MmeI TCCRAC 3 cut(s) 254, 273, 347
MnlI CCTC 3 cut(s) 70, 73, 346
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 125
NciI CCSGG 1 cut(s) 232
NdeII GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
NlaIII CATG 2 cut(s) 412, 451
NlaIV GGNNCC 2 cut(s) 84, 263
NruI TCGCGA 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 84, 263
PsuI RGATCY 2 cut(s) 261, 295
RruI TCGCGA 1 cut(s) 125
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
Sau3AI GATC 8 cut(s) 16, 60, 132, 175, 234, 261, 295, 439
ScrFI CCNGG 1 cut(s) 232
SetI ASST 6 cut(s) 37, 109, 229, 258, 346, 361
Sse9I AATT 2 cut(s) 169, 206
SspI AATATT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 405
TasI AATT 2 cut(s) 169, 206
TspDTI ATGAA 6 cut(s) 17, 27, 201, 219, 425, 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.