Prupe.2G202600_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000371
Physical Location & Seq
Reverse (-)
23883009 .. 23884343
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G202600.1

Sequence Viewer

Length: 387 bp
ATGGACAGCAAGTGCAACAGAAAAACAACAGGACGGGTTTCAGTGCCTGTAGGGTTCAGATTCCATCCCACTGAAGAGGAACTGGTGAACCACTACTTGAGGAAGAAGAAACAGGATAAAGATTTTAAAGTGAACCACATCATCCCTGAAATTGCTTTCTGCAAGCACGAGCCTTGGGATTTACCTGGGCTCTTGTTCACAGAGTCAGGATCGTGGGAAGAGGCCAATGTCGGAGGAGGGGGAGCCAGCATGACGAAGAGGCCAAGGAACGAGGAGGGGGAGGAGGGAGCGATCGTCCCCCCGCCAACCATACATCCAGAGAGGATGAAGGACTTTTTGGACACAGCGAGATTGGTACTCTCGGGGGAAATGTCGTGGGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

5.96

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 357
AjnI CCWGG 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 2 cut(s) 222, 260
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 361
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 167
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 173, 185, 263
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 173, 185, 263
BseGI GGATG 4 cut(s) 64, 141, 313, 330
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 3 cut(s) 249, 287, 296
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 224, 262
BsiEI CGRYCG 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 224, 262
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 209, 291
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 224, 262
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 173, 185, 263
BssMI GATC 2 cut(s) 209, 291
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 173, 263
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 3 cut(s) 69, 213, 251
BstC8I GCNNGC 2 cut(s) 164, 247
BstF5I GGATG 4 cut(s) 64, 141, 313, 330
BstKTI GATC 2 cut(s) 212, 294
BstMBI GATC 2 cut(s) 209, 291
BstMCI CGRYCG 1 cut(s) 294
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 224, 262
BtsCI GGATG 4 cut(s) 64, 141, 313, 330
BtsIMutI CAGTG 2 cut(s) 48, 69
Cac8I GCNNGC 2 cut(s) 164, 247
CaiI CAGNNNCTG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 172, 190, 224, 245, 262
CviKI_1 RGCY 5 cut(s) 172, 190, 224, 245, 262
CviQI GTAC 1 cut(s) 356
DpnI GATC 2 cut(s) 211, 293
DpnII GATC 2 cut(s) 209, 291
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 3 cut(s) 69, 213, 251
EarI CTCTTC 3 cut(s) 69, 213, 251
Eco130I CCWWGG 2 cut(s) 173, 263
Eco24I GRGCYC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 173, 263
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 2 cut(s) 173, 263
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 251, 311
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 249
FauI CCCGC 1 cut(s) 309
FokI GGATG 4 cut(s) 51, 128, 300, 337
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 1 cut(s) 385
HaeIII GGCC 2 cut(s) 224, 262
Hin1II CATG 1 cut(s) 253
HinfI GANTC 2 cut(s) 60, 203
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 88, 133, 198
Hpy188I TCNGA 2 cut(s) 59, 233
Hpy188III TCNNGA 2 cut(s) 207, 317
Hpy8I GTNNAC 3 cut(s) 88, 133, 198
HpyAV CCTTC 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 15, 162
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 209, 291
LmnI GCTCC 2 cut(s) 242, 287
MaeI CTAG 1 cut(s) 385
MalI GATC 2 cut(s) 211, 293
MboI GATC 2 cut(s) 209, 291
MboII GAAGA 5 cut(s) 86, 115, 118, 230, 268
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 211
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
NdeII GATC 2 cut(s) 209, 291
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 60
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 47
PvuI CGATCG 1 cut(s) 294
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 2 cut(s) 209, 291
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 187, 384
SfcI CTRYAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 173, 263
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 48, 76
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 2 cut(s) 48, 76
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.