RchiOBHm_Chr7g0236481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000371
Physical Location & Seq
Forward (+)
61253236 .. 61253775
540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21192

Sequence Viewer

Length: 447 bp
ATGGAGGAGTATACCAGTGTTGATGATCAATCCAGTTGTCCTGCCGCTCATGATCATTATGTGATTTGCCGACTGCGAGAGAACAAGACTGGACAAAGAAGGAAGTCTCAGGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGCTTTTACAACCAATGAGGCTAGAAAGACAGTGTCTTTGAACCAGAGTCCTAATCCTGAGCAGCAATTTGAAAATGAGTTGATTATTAGTGAGGGTGAGGCACAAAGCAGTATTAGTAATTGTATTGGTATGCCCGAGGATATTGATTGGCTTGATCTTGCATTGGAGGATATTGATTGGCTTGATCTTGCATTGGAGGAAGTAGAAGGGGATAGACTATCCCCTGCACTCGCAGAACAACAATCATTGACCTTTCAACTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

4.44

Isoelectric Point (pI)

65.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 220, 251, 437
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AspA2I CCTAGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 116, 287
AvaI CYCGRG 1 cut(s) 314
AvrII CCTAGG 1 cut(s) 137
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 135
BclI TGATCA 3 cut(s) 25, 52, 121
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 138, 201
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 2 cut(s) 45, 242
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 2 cut(s) 46, 243
BmeT110I CYCGRG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 237
BsaBI GATNNNNATC 2 cut(s) 120, 126
BsaJI CCNNGG 2 cut(s) 137, 315
Bse1I ACTGG 3 cut(s) 15, 33, 94
Bse8I GATNNNNATC 2 cut(s) 120, 126
BseDI CCNNGG 2 cut(s) 137, 315
BseGI GGATG 2 cut(s) 118, 127
BseJI GATNNNNATC 2 cut(s) 120, 126
BseMII CTCAG 2 cut(s) 122, 228
BseNI ACTGG 3 cut(s) 15, 33, 94
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 6 cut(s) 25, 52, 121, 169, 334, 364
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 121, 229
BspHI TCATGA 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 47
BsrI ACTGG 3 cut(s) 15, 33, 94
BssECI CCNNGG 2 cut(s) 137, 315
BssMI GATC 6 cut(s) 25, 52, 121, 169, 334, 364
BssNAI GTATAC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 163, 211
BstDEI CTNAG 2 cut(s) 108, 237
BstF5I GGATG 2 cut(s) 118, 127
BstKTI GATC 6 cut(s) 28, 55, 124, 172, 337, 367
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 6 cut(s) 25, 52, 121, 169, 334, 364
BstV1I GCAGC 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 118, 127
BtsIMutI CAGTG 2 cut(s) 22, 216
BveI ACCTGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 167
CciI TCATGA 1 cut(s) 49
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 136, 148, 200, 331, 361
CviKI_1 RGCY 5 cut(s) 136, 148, 200, 331, 361
DdeI CTNAG 2 cut(s) 108, 237
DpnI GATC 6 cut(s) 27, 54, 123, 171, 336, 366
DpnII GATC 6 cut(s) 25, 52, 121, 169, 334, 364
Eco130I CCWWGG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 53
FaiI YATR 4 cut(s) 12, 51, 60, 311
FatI CATG 1 cut(s) 49
FbaI TGATCA 3 cut(s) 25, 52, 121
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 45, 242
FokI GGATG 2 cut(s) 114, 125
Fsp4HI GCNGC 2 cut(s) 45, 242
FspBI CTAG 2 cut(s) 138, 201
GluI GCNGC 2 cut(s) 45, 242
Hin1II CATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 226
HphI GGTGA 2 cut(s) 116, 287
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 50, 110, 236
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 93, 380
HpyCH4III ACNGT 2 cut(s) 163, 211
HpyCH4V TGCA 3 cut(s) 341, 371, 407
HpyF3I CTNAG 2 cut(s) 108, 237
Hsp92II CATG 1 cut(s) 53
Ksp22I TGATCA 3 cut(s) 25, 52, 121
Kzo9I GATC 6 cut(s) 25, 52, 121, 169, 334, 364
LpnPI CCDG 9 cut(s) 28, 46, 54, 75, 95, 192, 236, 249, 417
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 2 cut(s) 138, 201
MalI GATC 6 cut(s) 27, 54, 123, 171, 336, 366
MbiI CCGCTC 1 cut(s) 47
MboI GATC 6 cut(s) 25, 52, 121, 169, 334, 364
MluCI AATT 2 cut(s) 245, 298
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 6 cut(s) 190, 265, 271, 310, 340, 370
MseI TTAA 1 cut(s) 445
NdeII GATC 6 cut(s) 25, 52, 121, 169, 334, 364
NlaIII CATG 1 cut(s) 53
PagI TCATGA 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 46, 243
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 2 cut(s) 45, 242
Sau3AI GATC 6 cut(s) 25, 52, 121, 169, 334, 364
SchI GAGTC 1 cut(s) 235
SetI ASST 2 cut(s) 181, 434
Sse9I AATT 2 cut(s) 245, 298
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 138, 201
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 163, 211
TasI AATT 2 cut(s) 245, 298
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 2 cut(s) 22, 216
TseI GCWGC 1 cut(s) 241
TspRI CASTG 2 cut(s) 22, 216
Tth111I GACNNNGTC 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 2 cut(s) 138, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.