MD05G1030600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000371
Physical Location & Seq
Reverse (-)
4904173 .. 4905303
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1030600.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGGTATTCCGAATCTGGGTTATTGGGGTATGCCGTTGGGCTGTCGGTTTCATCCAACTGATCAAGAATTGGTCAGTTATCTTCGTCTGAGAGCCGTCGCCGGAGAGCCATTAGACATTCCCTTTCTTCACGAGTTCAATCTCTTCGGCAGCGCACAACCCTGGGTGGTGTGGGAAAAATTCGGGGGAAATTCCTTCCTCGATCAAGATCTCTTCTTGTTTTACGAGCTGCAGCATTCGAAGAAGAACCACAAACGCTCTATCGAAGCTGGAGGCTCTTGGAAGGCAACCTCCTTCTCGCGAATTGAAGCCTTGGATGGAAATCCAATTGGGGAAAAACGGAATTTCAGTTATAAAAATAAAGGGTGCGAGAATGATGGTGAATGGCTGTTAGAAGAATACTGTCTTCTTCCTAATCCTAATCCAGTTGCTCACTCCGATCGTAAAGTAGTTCTTTCCCGACTTAAAAGGAGCTCCAGATCCAGGTGTGCAAACATGAATTTACCTCAAGAATTCAACGAGAAGCCCCCAATTAAGAAGAGAGCTAGAAAAGAAATATTGAATGAGGAGCCGGCTATTAAGAGAGCAAGAAAAGATCTATTGAATGAGAAGTCGCCGGTTAAAAAGACACAAAGAAAGGAACTATTGAATGAGAAGTCGCCGGTTAAAAAGACACAAAGAAAGGAACTATTGAATGAGAAGCCGTCGATTAAGAAGAGGGCAAGAAAAGAACTGGGATCACAAATTACTAGTGTGAATGTGATCACTAATTCCATTGATCAAAGCAATACTCCTTCTGTTGTGCCTTTTGATGAAATTGAATGCAACATGAATCATGATGATGAGTGCATAAGCAGCATTGACGGTAATGTTGCAATGCCGATGTATGATGTTTCTACTTACCCAATATGCTTTGGCAGCGAAGAAGAATTTCTTTTAAGCAATGAAAAGTATCTTGGAGAAACTGGGGATTTTTCGTTACCTGTTGAAGGTTTTGATTTTACTAGCGATGAAGAATATCTTTTACGCACTGACCCATTGATCCTAGACTTTGAACGGTGGTTGGGAACGGTTGAATCGCCACAGGAGCAACTTGGATGCGATCAGTTGCTTGTGGATGAGTGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

43.13

Weight (kDa)

5.44

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 136 1.6e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AccII CGCG 1 cut(s) 301
AclWI GGATC 3 cut(s) 474, 745, 1036
AcsI RAATTY 6 cut(s) 179, 190, 343, 499, 512, 929
AfiI CCNNNNNNNGG 3 cut(s) 17, 483, 989
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 2 cut(s) 161, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 939, 971
AluBI AGCT 4 cut(s) 229, 269, 474, 545
AluI AGCT 4 cut(s) 229, 269, 474, 545
Alw21I GWGCWC 1 cut(s) 476
AlwI GGATC 3 cut(s) 474, 745, 1036
ApeKI GCWGC 5 cut(s) 150, 229, 232, 855, 918
ApoI RAATTY 6 cut(s) 179, 190, 343, 499, 512, 929
Asp700I GAANNNNTTC 1 cut(s) 930
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 239
BanII GRGCYC 1 cut(s) 476
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 5 cut(s) 162, 216, 244, 867, 930
BccI CCATC 2 cut(s) 311, 371
BceAI ACGGC 3 cut(s) 19, 80, 688
BciT130I CCWGG 2 cut(s) 163, 484
BclI TGATCA 3 cut(s) 61, 762, 778
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 4 cut(s) 546, 750, 1005, 1046
BfmI CTRYAG 1 cut(s) 230
BglII AGATCT 2 cut(s) 208, 595
BisI GCNGC 5 cut(s) 151, 230, 233, 856, 919
BlsI GCNGC 5 cut(s) 152, 231, 234, 857, 920
Bme1390I CCNGG 2 cut(s) 163, 484
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 2 cut(s) 163, 484
BmrI ACTGGG 2 cut(s) 743, 975
BmsI GCATC 1 cut(s) 1088
BmuI ACTGGG 2 cut(s) 743, 975
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 2 cut(s) 291, 460
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 492
BsaBI GATNNNNATC 2 cut(s) 207, 321
BsaJI CCNNGG 3 cut(s) 161, 162, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 483, 989
Bse118I RCCGGY 3 cut(s) 571, 616, 661
Bse1I ACTGG 3 cut(s) 425, 738, 970
Bse3DI GCAATG 2 cut(s) 882, 949
Bse8I GATNNNNATC 2 cut(s) 207, 321
BseBI CCWGG 2 cut(s) 163, 484
BseDI CCNNGG 3 cut(s) 161, 162, 312
BseGI GGATG 4 cut(s) 52, 322, 1103, 1123
BseJI GATNNNNATC 2 cut(s) 207, 321
BseLI CCNNNNNNNGG 3 cut(s) 17, 483, 989
BseMI GCAATG 2 cut(s) 882, 949
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 3 cut(s) 425, 738, 970
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 5 cut(s) 162, 216, 244, 867, 930
Bsh1236I CGCG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 4 cut(s) 102, 572, 617, 662
BslI CCNNNNNNNGG 3 cut(s) 17, 483, 989
BsmI GAATGC 2 cut(s) 235, 827
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 476
Bsp68I TCGCGA 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 3 cut(s) 474, 745, 1036
BspT104I TTCGAA 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 882, 949
BsrFI RCCGGY 3 cut(s) 571, 616, 661
BsrI ACTGG 3 cut(s) 425, 738, 970
BssAI RCCGGY 3 cut(s) 571, 616, 661
BssECI CCNNGG 3 cut(s) 161, 162, 312
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 163, 484
Bst4CI ACNGT 4 cut(s) 404, 866, 1059, 1072
Bst6I CTCTTC 4 cut(s) 149, 218, 533, 710
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 4 cut(s) 52, 322, 1103, 1123
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 155
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 3 cut(s) 855, 918, 1087
BstNI CCWGG 2 cut(s) 163, 484
BstSCI CCNGG 2 cut(s) 161, 482
BstSFI CTRYAG 1 cut(s) 230
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 5 cut(s) 162, 216, 244, 867, 930
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 3 cut(s) 208, 479, 595
BstYI RGATCY 3 cut(s) 208, 479, 595
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 4 cut(s) 52, 322, 1103, 1123
BtsIMutI CAGTG 1 cut(s) 1029
BtuMI TCGCGA 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 835
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 3 cut(s) 571, 616, 661
CviAII CATG 3 cut(s) 496, 829, 836
DdeI CTNAG 1 cut(s) 89
Eam1104I CTCTTC 4 cut(s) 149, 218, 533, 710
EarI CTCTTC 4 cut(s) 149, 218, 533, 710
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 474
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 161, 482
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 499, 832, 839
FaiI YATR 8 cut(s) 32, 354, 497, 830, 837, 851, 888, 910
FalI AAGNNNNNCTT 6 cut(s) 438, 470, 918, 950, 1005, 1037
FatI CATG 3 cut(s) 495, 828, 835
FbaI TGATCA 3 cut(s) 61, 762, 778
Fnu4HI GCNGC 5 cut(s) 151, 230, 233, 856, 919
FokI GGATG 3 cut(s) 39, 329, 1110
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 5 cut(s) 151, 230, 233, 856, 919
FspBI CTAG 4 cut(s) 546, 750, 1005, 1046
GlaI GCGC 1 cut(s) 154
GluI GCNGC 5 cut(s) 151, 230, 233, 856, 919
GsuI CTGGAG 2 cut(s) 291, 460
HapII CCGG 4 cut(s) 102, 572, 617, 662
HhaI GCGC 1 cut(s) 155
Hin1II CATG 3 cut(s) 499, 832, 839
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 3 cut(s) 13, 832, 1076
HpaII CCGG 4 cut(s) 102, 572, 617, 662
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 3 cut(s) 12, 90, 439
Hpy188III TCNNGA 9 cut(s) 65, 131, 206, 300, 459, 477, 509, 836, 1128
Hpy99I CGWCG 2 cut(s) 101, 709
HpyAV CCTTC 5 cut(s) 205, 277, 304, 804, 983
HpyCH4III ACNGT 4 cut(s) 404, 866, 1059, 1072
HpyCH4V TGCA 5 cut(s) 232, 491, 825, 849, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 855, 918, 1087
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 3 cut(s) 499, 832, 839
HspAI GCGC 1 cut(s) 153
KroI GCCGGC 1 cut(s) 571
KroNI GCCGGC 1 cut(s) 573
Ksp22I TGATCA 3 cut(s) 61, 762, 778
LmnI GCTCC 4 cut(s) 471, 479, 568, 1087
Lsp1109I GCAGC 5 cut(s) 162, 216, 244, 867, 930
LweI GCATC 1 cut(s) 1088
MaeI CTAG 4 cut(s) 546, 750, 1005, 1046
MaeIII GTNAC 1 cut(s) 978
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 3 cut(s) 208, 479, 595
MhlI GDGCHC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 6 cut(s) 209, 266, 301, 516, 559, 711
MroNI GCCGGC 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 7 cut(s) 465, 534, 579, 621, 666, 711, 938
MslI CAYNNNNRTG 1 cut(s) 840
MspI CCGG 4 cut(s) 102, 572, 617, 662
MspR9I CCNGG 2 cut(s) 163, 484
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 235, 827
MvaI CCWGG 2 cut(s) 163, 484
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 3 cut(s) 855, 918, 1087
NaeI GCCGGC 1 cut(s) 573
NgoMIV GCCGGC 1 cut(s) 571
NlaIII CATG 3 cut(s) 499, 832, 839
NlaIV GGNNCC 1 cut(s) 570
NruI TCGCGA 1 cut(s) 301
NspV TTCGAA 1 cut(s) 239
PagI TCATGA 1 cut(s) 835
PasI CCCWGGG 1 cut(s) 162
PctI GAATGC 2 cut(s) 235, 827
PdiI GCCGGC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 3 cut(s) 13, 832, 1076
PkrI GCNGC 5 cut(s) 152, 231, 234, 857, 920
Ple19I CGATCG 1 cut(s) 442
PsiI TTATAA 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 161, 482
PspGI CCWGG 2 cut(s) 161, 482
PspN4I GGNNCC 1 cut(s) 570
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 3 cut(s) 208, 479, 595
PvuI CGATCG 1 cut(s) 442
RruI TCGCGA 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 840
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 7 cut(s) 465, 534, 579, 621, 666, 711, 938
SatI GCNGC 5 cut(s) 151, 230, 233, 856, 919
ScrFI CCNGG 2 cut(s) 163, 484
SduI GDGCHC 1 cut(s) 476
SetI ASST 9 cut(s) 231, 271, 293, 476, 488, 508, 547, 985, 994
SfaNI GCATC 1 cut(s) 1088
SfcI CTRYAG 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
SpeI ACTAGT 1 cut(s) 749
SspI AATATT 1 cut(s) 558
SspMI CTAG 4 cut(s) 546, 750, 1005, 1046
SstI GAGCTC 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 161, 482
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 4 cut(s) 404, 866, 1059, 1072
TaqI TCGA 4 cut(s) 201, 239, 264, 707
TfiI GAWTC 3 cut(s) 13, 832, 1076
Tru1I TTAA 7 cut(s) 465, 534, 579, 621, 666, 711, 938
Tru9I TTAA 7 cut(s) 465, 534, 579, 621, 666, 711, 938
TscAI CASTG 1 cut(s) 1036
TseI GCWGC 5 cut(s) 150, 229, 232, 855, 918
TspDTI ATGAA 6 cut(s) 41, 512, 828, 845, 960, 1026
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 1036
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 6 cut(s) 179, 190, 343, 499, 512, 929
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 4 cut(s) 546, 750, 1005, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.