Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Forward (+)

1451674 .. 1453126

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1005400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCTAATTCATCGAGTGGTGGTGTGCCTCCGGGATTCCGATTCCACCCCACGGACGAAGAGTTGCTTCACTATTATTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGAGGTCATTAGAGAGGTGGACTTGAATAAGATGGAACCTTGGGACTTGCAAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

58

Amino Acids

6.75

Weight (kDa)

5.16

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 55	1.5e-15	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	82, 139
AsuC2I	CCSGG	1 cut(s)	33
BccI	CCATC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	51, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	51, 152
BseLI	CCNNNNNNNGG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	51, 152
BssT1I	CCWWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	51
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 80, 112
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	111
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	2 cut(s)	36, 42
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	41, 102
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	115
LpnPI	CCDG	1 cut(s)	45
MboII	GAAGA	3 cut(s)	71, 94, 97
MluCI	AATT	1 cut(s)	7
MnlI	CCTC	3 cut(s)	39, 109, 121
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	33
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	36, 42
PfoI	TCCNGGA	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	93, 120, 132, 154
SgeI	CNNG	7 cut(s)	27, 44, 45, 64, 124, 148, 165
Sse9I	AATT	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	36, 42
TspGWI	ACGGA	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.