RLG00000018920

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000371
Physical Location & Seq
Reverse (-)
42806605 .. 42812026
5422 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018920

Sequence Viewer

Length: 1107 bp
ATGTCCAAAGCACGCATCACTCCAGCACCTTACGTGAACTTTCGCTTCATCACCTTCTTAGCCTCCGTTGGTCTAAACGCTGACTCCAACTACGAAGGATTAAGATCCTCCATTGGTTTGTTAACGAGCTCCAAGTGGACGTCCCACCTTTCTCCTCTTTGGTGGAGACACTTTCAGCATTCCATGGAGTCAATATTTGAGTTCCACCCAACTGATGAAGAACTGATCAGTTATTTCCTCTACAACAAGAACAATGTCGGCACAATGGCAGAAGTGCCATCAATGGCTACATACAATTACAACAAAATTATGCCCGAGCTTGACCTTTATGGTGAGGTAGAACCATGGCAGATTTGGGAAACGTATGGGGGATCGGAACTGTATGACCAGGATATGTTCTTTTTTACACAGCACAAGACGGTAAACCCCGATGGTTTACGCATTCATCGCAAGGTTGGATCTGGTGGTACTTGGAGTGAAGGAGAACCTGGCAAACTTATATTTGATCCAAAGCATAAGCAGAAACCTATTGGACAAAAAAGGAAATTTCGATATGAGAATAAAGGGTCCGACCACAATGGTTCTTGGTATTTGGAAGAGTATAGTCTTCTTCTTACTAACTCTGCAAATTATGTACTTTGTCGGCTCCGACAGAATATCAAGACACGAAAGAAGAGGAAGGAGATATTATTGTGCCAAGAACCTAGTGCATTGCCAATGAGTTACATACCTGTAGGGTTCAGGTTCCACCCCACGGATCAAGAGTTGATCAGTTACTTCCTCTACAACAAGCTGACAGAGGAAGCATCATTATACAGTTACAAAAACATTGTGTGCGAACTGCGAAAGAACAACAAATCACCACGGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGCATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTGCTTTCTGTTACTAACAAAAAGCTAATGCGAAAGCAAAGTAATGTGATGATGAATATAACCAACAACAAGAAAAACTTGTCTCACCAGCCAATAGATCAGACAAAGAGGACGGAACCTTGCACGAAATTCAAATTATTTGGTGTAGAGATAGGTTCTAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

369

Amino Acids

43.02

Weight (kDa)

9.39

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 66 - 203 3e-19 No apical meristem (NAM) protein
NAM PF02365 244 - 310 7.5e-07 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AclWI GGATC 5 cut(s) 99, 379, 466, 500, 765
AcoI YGGCCR 1 cut(s) 866
AcsI RAATTY 2 cut(s) 545, 1067
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 3 cut(s) 469, 636, 902
AfiI CCNNNNNNNGG 1 cut(s) 754
AgsI TTSAA 1 cut(s) 1072
AjnI CCWGG 2 cut(s) 387, 487
AluBI AGCT 5 cut(s) 129, 319, 793, 940, 964
AluI AGCT 5 cut(s) 129, 319, 793, 940, 964
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 160, 1026
AlwI GGATC 5 cut(s) 99, 379, 466, 500, 765
AlwNI CAGNNNCTG 1 cut(s) 940
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 866
ApeKI GCWGC 1 cut(s) 940
ApoI RAATTY 2 cut(s) 545, 1067
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 43, 344, 852, 1016
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 927
BccI CCATC 2 cut(s) 286, 425
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 2 cut(s) 389, 489
BclI TGATCA 2 cut(s) 225, 768
BcoDI GTCTC 2 cut(s) 160, 1026
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 1 cut(s) 941
BlsI GCNGC 1 cut(s) 942
Bme1390I CCNGG 2 cut(s) 389, 489
Bme18I GGWCC 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 4 cut(s) 568, 647, 746, 1056
BmrFI CCNGG 2 cut(s) 389, 489
BmsI GCATC 2 cut(s) 24, 815
BpiI GAAGAC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 4 cut(s) 183, 344, 753, 863
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 710
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 2 cut(s) 389, 489
BseDI CCNNGG 4 cut(s) 183, 344, 753, 863
BseJI GATNNNNATC 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMI GCAATG 1 cut(s) 710
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 927
BshFI GGCC 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 2 cut(s) 160, 1026
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 2 cut(s) 178, 441
BsnI GGCC 1 cut(s) 868
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
Bsp19I CCATGG 2 cut(s) 183, 344
BspANI GGCC 1 cut(s) 868
BspLI GGNNCC 4 cut(s) 568, 647, 746, 1056
BspPI GGATC 5 cut(s) 99, 379, 466, 500, 765
BsrDI GCAATG 1 cut(s) 710
BssECI CCNNGG 4 cut(s) 183, 344, 753, 863
BssMI GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 2 cut(s) 183, 344
Bst2UI CCWGG 2 cut(s) 389, 489
Bst4CI ACNGT 4 cut(s) 381, 421, 818, 905
Bst6I CTCTTC 2 cut(s) 591, 668
BstACI GRCGYC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 940
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 4 cut(s) 183, 344, 753, 863
BstKTI GATC 8 cut(s) 107, 228, 374, 461, 508, 760, 771, 1039
BstMAI GTCTC 2 cut(s) 160, 1026
BstMBI GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 447, 940
BstNI CCWGG 2 cut(s) 389, 489
BstSCI CCNGG 2 cut(s) 387, 487
BstSFI CTRYAG 1 cut(s) 732
BstV1I GCAGC 1 cut(s) 927
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 2 cut(s) 104, 458
BstYI RGATCY 2 cut(s) 104, 458
BsuRI GGCC 1 cut(s) 868
BtgI CCRYGG 4 cut(s) 183, 344, 753, 863
BtgZI GCGATG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 468, 635, 901
CspCI CAANNNNNGTGG 2 cut(s) 852, 887
CviAII CATG 2 cut(s) 184, 345
CviQI GTAC 3 cut(s) 468, 635, 901
DdeI CTNAG 1 cut(s) 58
DpnI GATC 8 cut(s) 106, 227, 373, 460, 507, 759, 770, 1038
DpnII GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
EaeI YGGCCR 1 cut(s) 866
Eam1104I CTCTTC 2 cut(s) 591, 668
EarI CTCTTC 2 cut(s) 591, 668
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 183, 344
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 387, 487
EcoT14I CCWWGG 2 cut(s) 183, 344
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 2 cut(s) 183, 344
FaeI CATG 2 cut(s) 187, 348
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 183, 344
FbaI TGATCA 2 cut(s) 225, 768
Fnu4HI GCNGC 1 cut(s) 941
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 941
FspBI CTAG 1 cut(s) 705
GluI GCNGC 1 cut(s) 941
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 868
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 187, 348
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 3 cut(s) 83, 188, 920
HpaI GTTAAC 1 cut(s) 123
HphI GGTGA 4 cut(s) 43, 344, 852, 1016
Hpy166II GTNNAC 5 cut(s) 37, 123, 138, 424, 437
Hpy188I TCNGA 5 cut(s) 376, 571, 650, 877, 1041
Hpy188III TCNNGA 2 cut(s) 661, 761
Hpy8I GTNNAC 5 cut(s) 37, 123, 138, 424, 437
HpyAV CCTTC 4 cut(s) 64, 89, 473, 673
HpyCH4III ACNGT 4 cut(s) 381, 421, 818, 905
HpyCH4IV ACGT 3 cut(s) 33, 140, 362
HpyCH4V TGCA 4 cut(s) 626, 710, 908, 1062
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 940
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 3 cut(s) 33, 140, 362
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 187, 348
Ksp22I TGATCA 2 cut(s) 225, 768
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
LmnI GCTCC 2 cut(s) 134, 651
LpnPI CCDG 9 cut(s) 36, 374, 401, 447, 474, 501, 727, 744, 1040
Lsp1109I GCAGC 1 cut(s) 927
LweI GCATC 2 cut(s) 24, 815
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 33, 140, 362
MaeIII GTNAC 4 cut(s) 722, 773, 818, 949
MalI GATC 8 cut(s) 106, 227, 373, 460, 507, 759, 770, 1038
MboI GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
MboII GAAGA 5 cut(s) 230, 599, 602, 608, 685
MflI RGATCY 2 cut(s) 104, 458
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 6 cut(s) 295, 306, 545, 628, 1067, 1073
MlyI GAGTC 2 cut(s) 77, 197
MmeI TCCRAC 4 cut(s) 111, 436, 594, 673
MnlI CCTC 9 cut(s) 73, 118, 165, 248, 328, 669, 791, 793, 1041
MseI TTAA 2 cut(s) 101, 122
MspR9I CCNGG 2 cut(s) 389, 489
Mva1269I GAATGC 2 cut(s) 178, 441
MvaI CCWGG 2 cut(s) 389, 489
MwoI GCNNNNNNNGC 2 cut(s) 447, 940
NcoI CCATGG 2 cut(s) 183, 344
NdeII GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
NlaIII CATG 2 cut(s) 187, 348
NlaIV GGNNCC 4 cut(s) 568, 647, 746, 1056
PctI GAATGC 2 cut(s) 178, 441
PfeI GAWTC 1 cut(s) 920
PkrI GCNGC 1 cut(s) 942
PleI GAGTC 2 cut(s) 77, 196
PpsI GAGTC 2 cut(s) 77, 196
Ppu21I YACGTR 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 387, 487
PspGI CCWGG 2 cut(s) 387, 487
PspN4I GGNNCC 4 cut(s) 568, 647, 746, 1056
PspPI GGNCC 1 cut(s) 567
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 104, 458
RsaI GTAC 3 cut(s) 469, 636, 902
RsaNI GTAC 3 cut(s) 468, 635, 901
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 101, 122
SatI GCNGC 1 cut(s) 941
Sau3AI GATC 8 cut(s) 104, 225, 371, 458, 505, 757, 768, 1036
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 77, 197
ScrFI CCNGG 2 cut(s) 389, 489
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 2 cut(s) 24, 815
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 567
Sse9I AATT 6 cut(s) 295, 306, 545, 628, 1067, 1073
SspI AATATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 705
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 387, 487
StyI CCWWGG 2 cut(s) 183, 344
TaaI ACNGT 4 cut(s) 381, 421, 818, 905
TaiI ACGT 3 cut(s) 36, 143, 365
TaqI TCGA 1 cut(s) 550
TasI AATT 6 cut(s) 295, 306, 545, 628, 1067, 1073
TatI WGTACW 2 cut(s) 634, 900
TfiI GAWTC 1 cut(s) 920
Tru1I TTAA 2 cut(s) 101, 122
Tru9I TTAA 2 cut(s) 101, 122
TscAI CASTG 1 cut(s) 910
TseI GCWGC 1 cut(s) 940
TspDTI ATGAA 4 cut(s) 37, 231, 434, 1007
TspGWI ACGGA 3 cut(s) 55, 770, 1067
TspRI CASTG 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 567
XapI RAATTY 2 cut(s) 545, 1067
XcmI CCANNNNNNNNNTGG 2 cut(s) 351, 876
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.