Rmu_sc0002222.1_g000014
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002222.1
OG0000371
Physical Location & Seq
Reverse (-)
60692 .. 61258
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002222.1_g000014.1.cds

Sequence Viewer

Length: 567 bp
atgctagttcccggcatagtcgaagggttggatcatcgggcacatggagccaaggtgaaccgtccaaacccatttatttttggcgacaagaaccaggaaaccccaattgggcgaaagacgaaattgaggtacgagaacaaactggtgccggaacaacacggttgttggattatggaggagtataccagtgttgatgatcaatccagttgccctgccgctcatgatcattatgtgatttgccgactccgagagaacaagactggacaaagaaggaagtctcaggatgatgatgatcaccatccaaagcctaggaaaaagcccaagtctttgacagttgctgatgcttttacaaccaatgaggctagaaagacagtgtctttgaaccagagtcctaatcctgagcagcaatttgaaaatgagttgattattagtgagggtgaggcacaaagcagtattagtaattgtattggtatgcccgaggatattgattggcttgatcttgcattggaggaagtagaagcccctgcactcgcacaacaacaatcattcacctttcaactttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

188

Amino Acids

21.31

Weight (kDa)

5.37

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 182
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 39
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 382, 413, 557
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
AspA2I CCTAGG 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 67, 287, 449, 541
AvaI CYCGRG 1 cut(s) 476
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 95
BclI TGATCA 3 cut(s) 196, 223, 292
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 3 cut(s) 5, 309, 363
BisI GCNGC 2 cut(s) 216, 404
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 2 cut(s) 217, 405
Bme1390I CCNGG 2 cut(s) 12, 95
BmeT110I CYCGRG 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 49, 147
BmrFI CCNGG 2 cut(s) 12, 95
BmsI GCATC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 12
BsaBI GATNNNNATC 2 cut(s) 291, 297
BsaJI CCNNGG 3 cut(s) 51, 308, 477
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 4 cut(s) 147, 186, 204, 265
Bse8I GATNNNNATC 2 cut(s) 291, 297
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 51, 308, 477
BseGI GGATG 2 cut(s) 289, 298
BseJI GATNNNNATC 2 cut(s) 291, 297
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 293, 390
BseNI ACTGG 4 cut(s) 147, 186, 204, 265
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 510
BshNI GGYRCC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 2 cut(s) 12, 149
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 5 cut(s) 31, 196, 223, 292, 496
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 292, 391
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 49, 147
BspPI GGATC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 4 cut(s) 147, 186, 204, 265
BssECI CCNNGG 3 cut(s) 51, 308, 477
BssMI GATC 5 cut(s) 31, 196, 223, 292, 496
BssNAI GTATAC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 51, 308
Bst1107I GTATAC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 4 cut(s) 62, 161, 334, 373
BstDEI CTNAG 2 cut(s) 279, 399
BstF5I GGATG 2 cut(s) 289, 298
BstKTI GATC 5 cut(s) 34, 199, 226, 295, 499
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 5 cut(s) 31, 196, 223, 292, 496
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 10, 93
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 415
BstZ17I GTATAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 289, 298
BtsIMutI CAGTG 2 cut(s) 193, 378
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 44, 221
CviJI RGCY 6 cut(s) 50, 307, 319, 362, 493, 521
CviKI_1 RGCY 6 cut(s) 50, 307, 319, 362, 493, 521
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 2 cut(s) 279, 399
DpnI GATC 5 cut(s) 33, 198, 225, 294, 498
DpnII GATC 5 cut(s) 31, 196, 223, 292, 496
Eco130I CCWWGG 2 cut(s) 51, 308
Eco88I CYCGRG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 51, 308
ErhI CCWWGG 2 cut(s) 51, 308
FaeI CATG 2 cut(s) 47, 224
FaiI YATR 7 cut(s) 17, 45, 173, 183, 222, 231, 473
FatI CATG 2 cut(s) 43, 220
FbaI TGATCA 3 cut(s) 196, 223, 292
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 216, 404
FokI GGATG 2 cut(s) 285, 296
Fsp4HI GCNGC 2 cut(s) 216, 404
FspBI CTAG 3 cut(s) 5, 309, 363
GluI GCNGC 2 cut(s) 216, 404
HapII CCGG 2 cut(s) 12, 149
Hin1II CATG 2 cut(s) 47, 224
HinfI GANTC 2 cut(s) 243, 388
HpaII CCGG 2 cut(s) 12, 149
HphI GGTGA 4 cut(s) 67, 287, 449, 541
Hpy166II GTNNAC 2 cut(s) 58, 183
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 221, 281, 398
Hpy8I GTNNAC 2 cut(s) 58, 183
HpyAV CCTTC 2 cut(s) 17, 264
HpyCH4III ACNGT 4 cut(s) 62, 161, 334, 373
HpyCH4V TGCA 2 cut(s) 503, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 279, 399
Hsp92II CATG 2 cut(s) 47, 224
Ksp22I TGATCA 3 cut(s) 196, 223, 292
Kzo9I GATC 5 cut(s) 31, 196, 223, 292, 496
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 5, 309, 363
MalI GATC 5 cut(s) 33, 198, 225, 294, 498
MbiI CCGCTC 1 cut(s) 218
MboI GATC 5 cut(s) 31, 196, 223, 292, 496
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 4 cut(s) 105, 122, 407, 460
MlyI GAGTC 2 cut(s) 237, 397
MmeI TCCRAC 2 cut(s) 9, 146
MnlI CCTC 7 cut(s) 120, 169, 352, 427, 433, 472, 502
MseI TTAA 1 cut(s) 565
MspI CCGG 2 cut(s) 12, 149
MspR9I CCNGG 2 cut(s) 12, 95
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 12
NdeII GATC 5 cut(s) 31, 196, 223, 292, 496
NlaIII CATG 2 cut(s) 47, 224
NlaIV GGNNCC 2 cut(s) 49, 147
PagI TCATGA 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 373
PkrI GCNGC 2 cut(s) 217, 405
PleI GAGTC 2 cut(s) 237, 396
PpsI GAGTC 2 cut(s) 237, 396
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 49, 147
PstNI CAGNNNCTG 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 373
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 565
SatI GCNGC 2 cut(s) 216, 404
Sau3AI GATC 5 cut(s) 31, 196, 223, 292, 496
SchI GAGTC 2 cut(s) 237, 397
ScrFI CCNGG 2 cut(s) 12, 95
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 57, 131, 554
SfaNI GCATC 1 cut(s) 331
Sse9I AATT 4 cut(s) 105, 122, 407, 460
SsiI CCGC 1 cut(s) 216
SspMI CTAG 3 cut(s) 5, 309, 363
StyD4I CCNGG 2 cut(s) 10, 93
StyI CCWWGG 2 cut(s) 51, 308
TaaI ACNGT 4 cut(s) 62, 161, 334, 373
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 105, 122, 407, 460
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 565
Tru9I TTAA 1 cut(s) 565
TscAI CASTG 2 cut(s) 193, 378
TseI GCWGC 1 cut(s) 403
TspRI CASTG 2 cut(s) 193, 378
Tth111I GACNNNGTC 1 cut(s) 373
XmaJI CCTAGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 3 cut(s) 5, 309, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.