Rw5G020070
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000371
Physical Location & Seq
Reverse (-)
26203805 .. 26204686
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020070.1

Sequence Viewer

Length: 882 bp
ATGGATCGTTGTTTTCCTGTGGGTGTGAGATTCCACCCGACTGATGAAGAACTGATTGGGCACTACCTCCACCTCAAGAATAATCCTAACTCGGCGACACCGTCCTTGGTACTTCCTGAGTTTGATTTGTACGGTGAGGTCGAACCCTGGATCATTTGGGATGCCTATGGAGGACCCAATCTCAAACAACAAGATCTCTTCTTTTTTACTCTCCTTAAGAAGAAGGCCAATCCCCGCGGCGGCCATGCTAGTACCCGGCATAGTCGAAGGGTTGGATCATCGGGCACATGGAGCCAAGGTGAACCGTCCAAACCCATTTTTGGCGAGAAGAACCAGGAAACCCCAATTGGGCGAAAGACGAAATTGAGGTACGAGAACAAACTGGGGCCGGAACAACACGGTTGTTGGATTATGGAGGAGTATACTAGTGTTGATGATCAATCCAGTTGTCCTGCCGCTCATGATCATTATGTGATTTGCCGACTCCGAGAGAACAAGACTGGACAAAGAGGAGCAATAAGAAGGAAGTCTCAGGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTTCTTTTACAACCAATGAGGCTAGAAAGACAGTGTCTCTGAACCAGAGTCCTAATCCTGAGCAGCAATTTGAAAATGAGTTGATTATTAGTGAGGGTGAGGCACAAAGCAGTATTAGTAATTGTATTGGTATGCCCGAGGATATTGATTGGCTTGATCTTGCATTGGAGGATATTGATTGGCTTGATCTTGCATTGGAGGAAGTAGAAGGGGATAGACTATCCCCTGCACTCGCAGAACAACAAACATTGTTGTCATCATTGACCTTTCAACTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

293

Amino Acids

33.19

Weight (kDa)

5.34

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 142 2.7e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 422
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 235, 237, 240, 456
AclWI GGATC 4 cut(s) 12, 158, 283, 587
AcoI YGGCCR 1 cut(s) 241
AfaI GTAC 4 cut(s) 111, 131, 253, 371
AfiI CCNNNNNNNGG 3 cut(s) 239, 320, 348
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 674, 872
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 2 cut(s) 146, 333
AjuI GAANNNNNNNTTGG 4 cut(s) 39, 71, 330, 362
Alw26I GTCTC 2 cut(s) 534, 642
AlwI GGATC 4 cut(s) 12, 158, 283, 587
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 3 cut(s) 225, 241, 386
ApeKI GCWGC 1 cut(s) 664
AspA2I CCTAGG 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 173, 386
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 4 cut(s) 146, 311, 539, 710
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 560
BaeGI GKGCMC 2 cut(s) 63, 287
BbvI GCAGC 1 cut(s) 676
BccI CCATC 1 cut(s) 558
BciT130I CCWGG 2 cut(s) 148, 335
BclI TGATCA 3 cut(s) 436, 463, 544
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 534, 642
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 4 cut(s) 249, 426, 561, 624
BfrI CTTAAG 1 cut(s) 215
BglII AGATCT 1 cut(s) 193
BisI GCNGC 4 cut(s) 238, 241, 456, 665
BlnI CCTAGG 1 cut(s) 560
BlsI GCNGC 4 cut(s) 239, 242, 457, 666
Bme1390I CCNGG 3 cut(s) 148, 256, 335
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 2 cut(s) 173, 386
BmiI GGNNCC 3 cut(s) 175, 293, 387
BmrFI CCNGG 3 cut(s) 148, 256, 335
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 392
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 2 cut(s) 543, 549
BsaJI CCNNGG 6 cut(s) 105, 146, 235, 295, 560, 738
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 320, 348
Bse1I ACTGG 3 cut(s) 387, 444, 505
Bse8I GATNNNNATC 2 cut(s) 543, 549
BseBI CCWGG 2 cut(s) 148, 335
BseDI CCNNGG 6 cut(s) 105, 146, 235, 295, 560, 738
BseGI GGATG 3 cut(s) 166, 541, 550
BseJI GATNNNNATC 2 cut(s) 543, 549
BseLI CCNNNNNNNGG 3 cut(s) 239, 320, 348
BseMII CTCAG 3 cut(s) 108, 545, 651
BseNI ACTGG 3 cut(s) 387, 444, 505
BseRI GAGGAG 2 cut(s) 431, 525
BseSI GKGCMC 2 cut(s) 63, 287
BseXI GCAGC 1 cut(s) 676
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 227, 243, 388
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 2 cut(s) 256, 389
BslI CCNNNNNNNGG 3 cut(s) 239, 320, 348
BsmAI GTCTC 2 cut(s) 534, 642
BsnI GGCC 3 cut(s) 227, 243, 388
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 63, 287
BspACI CCGC 4 cut(s) 235, 237, 240, 456
BspANI GGCC 3 cut(s) 227, 243, 388
BspCNI CTCAG 3 cut(s) 109, 544, 652
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 175, 293, 387
BspPI GGATC 4 cut(s) 12, 158, 283, 587
BspTI CTTAAG 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 458
BsrI ACTGG 3 cut(s) 387, 444, 505
BssECI CCNNGG 6 cut(s) 105, 146, 235, 295, 560, 738
BssNAI GTATAC 1 cut(s) 423
BssT1I CCWWGG 3 cut(s) 105, 295, 560
Bst1107I GTATAC 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 148, 335
Bst4CI ACNGT 6 cut(s) 102, 134, 306, 401, 586, 634
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 117, 531, 660
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 166, 541, 550
BstFNI CGCG 1 cut(s) 237
BstMAI GTCTC 2 cut(s) 534, 642
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 148, 335
BstSCI CCNGG 3 cut(s) 146, 254, 333
BstSLI GKGCMC 2 cut(s) 63, 287
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 423
BsuRI GGCC 3 cut(s) 227, 243, 388
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 166, 541, 550
BtsIMutI CAGTG 1 cut(s) 639
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 173, 386
Cfr42I CCGCGG 1 cut(s) 238
Csp6I GTAC 4 cut(s) 110, 130, 252, 370
CviAII CATG 3 cut(s) 245, 288, 461
CviJI RGCY 9 cut(s) 227, 243, 294, 388, 559, 571, 623, 754, 784
CviKI_1 RGCY 9 cut(s) 227, 243, 294, 388, 559, 571, 623, 754, 784
CviQI GTAC 4 cut(s) 110, 130, 252, 370
DdeI CTNAG 3 cut(s) 117, 531, 660
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 3 cut(s) 105, 295, 560
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 146, 333
EcoT14I CCWWGG 3 cut(s) 105, 295, 560
ErhI CCWWGG 3 cut(s) 105, 295, 560
FaeI CATG 3 cut(s) 248, 291, 464
FaiI YATR 9 cut(s) 168, 246, 261, 289, 413, 423, 462, 471, 734
FatI CATG 3 cut(s) 244, 287, 460
FauI CCCGC 1 cut(s) 242
FbaI TGATCA 3 cut(s) 436, 463, 544
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 4 cut(s) 238, 241, 456, 665
FokI GGATG 3 cut(s) 173, 537, 548
Fsp4HI GCNGC 4 cut(s) 238, 241, 456, 665
FspBI CTAG 4 cut(s) 249, 426, 561, 624
GluI GCNGC 4 cut(s) 238, 241, 456, 665
HaeIII GGCC 3 cut(s) 227, 243, 388
HapII CCGG 2 cut(s) 256, 389
Hin1II CATG 3 cut(s) 248, 291, 464
HinfI GANTC 3 cut(s) 30, 483, 649
HpaII CCGG 2 cut(s) 256, 389
HphI GGTGA 4 cut(s) 146, 311, 539, 710
Hpy166II GTNNAC 2 cut(s) 302, 423
Hpy188I TCNGA 2 cut(s) 488, 642
Hpy188III TCNNGA 5 cut(s) 76, 116, 461, 533, 659
Hpy8I GTNNAC 2 cut(s) 302, 423
HpyAV CCTTC 5 cut(s) 217, 261, 516, 612, 803
HpyCH4III ACNGT 6 cut(s) 102, 134, 306, 401, 586, 634
HpyCH4V TGCA 3 cut(s) 764, 794, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 3 cut(s) 117, 531, 660
Hsp92II CATG 3 cut(s) 248, 291, 464
Ksp22I TGATCA 3 cut(s) 436, 463, 544
KspI CCGCGG 1 cut(s) 238
LmnI GCTCC 2 cut(s) 291, 512
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 249, 426, 561, 624
MbiI CCGCTC 1 cut(s) 458
MboII GAAGA 4 cut(s) 59, 190, 232, 340
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 63, 287
MluCI AATT 4 cut(s) 345, 362, 668, 721
MlyI GAGTC 2 cut(s) 477, 658
MmeI TCCRAC 2 cut(s) 253, 386
MseI TTAA 2 cut(s) 216, 880
MspA1I CMGCKG 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 2 cut(s) 256, 389
MspR9I CCNGG 3 cut(s) 148, 256, 335
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 2 cut(s) 148, 335
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 256
NlaIII CATG 3 cut(s) 248, 291, 464
NlaIV GGNNCC 3 cut(s) 175, 293, 387
NmeAIII GCCGAG 1 cut(s) 71
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 138
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 2 cut(s) 100, 634
PkrI GCNGC 4 cut(s) 239, 242, 457, 666
PleI GAGTC 2 cut(s) 477, 657
PpsI GAGTC 2 cut(s) 477, 657
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 146, 333
PspGI CCWGG 2 cut(s) 146, 333
PspN4I GGNNCC 3 cut(s) 175, 293, 387
PspPI GGNCC 2 cut(s) 173, 386
PspPPI RGGWCCY 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 2 cut(s) 100, 634
RsaI GTAC 4 cut(s) 111, 131, 253, 371
RsaNI GTAC 4 cut(s) 110, 130, 252, 370
SacII CCGCGG 1 cut(s) 238
SaqAI TTAA 2 cut(s) 216, 880
SatI GCNGC 4 cut(s) 238, 241, 456, 665
Sau96I GGNCC 2 cut(s) 173, 386
SchI GAGTC 2 cut(s) 477, 658
ScrFI CCNGG 3 cut(s) 148, 256, 335
SduI GDGCHC 2 cut(s) 63, 287
SetI ASST 7 cut(s) 69, 75, 141, 301, 371, 604, 869
SfaNI GCATC 1 cut(s) 151
Sfr303I CCGCGG 1 cut(s) 238
SgrBI CCGCGG 1 cut(s) 238
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 74, 215
SmoI CTYRAG 2 cut(s) 74, 215
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 4 cut(s) 345, 362, 668, 721
SsiI CCGC 4 cut(s) 235, 237, 240, 456
SspMI CTAG 4 cut(s) 249, 426, 561, 624
StyD4I CCNGG 3 cut(s) 146, 254, 333
StyI CCWWGG 3 cut(s) 105, 295, 560
TaaI ACNGT 6 cut(s) 102, 134, 306, 401, 586, 634
TaqI TCGA 2 cut(s) 141, 265
TasI AATT 4 cut(s) 345, 362, 668, 721
TauI GCSGC 3 cut(s) 240, 243, 458
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 216, 880
Tru9I TTAA 2 cut(s) 216, 880
TscAI CASTG 1 cut(s) 639
TseI GCWGC 1 cut(s) 664
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 1 cut(s) 639
Tth111I GACNNNGTC 2 cut(s) 100, 634
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 4 cut(s) 249, 426, 561, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.