Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000371

Physical Location & Seq

Genomic Coordinates Forward (+)

127526 .. 128034

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAAAACCCAGAATCAAGGCTGCCACCAGGATTTAGGTTTCACCCTACAGATGAAGAGCTCATCCTTCACTACCTTGTAAAGAAGGTGGCCTCCACTCCCTTACCTGTTTCCGTCATCGCTGAAGTTGATATCTACAAGTTTGATCCATGGGAATTGCCAGCCAAAGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGTCCAAGAGATCGATCAAGTACCCGAATGGTGCGAGGCCAAACAGGGCTGCCGCATCAGGGTATTGGAAGGCAACTGGAACCGATAAGACGATTGTGGCACCATCAGGAGGGGGGCAGAACGTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

9.45

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 81	6.6e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica	MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica	Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis	pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis	RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata	RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora	Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa	Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha	Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana	Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	300
AciI	CCGC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	323
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	144, 184
AfaI	GTAC	2 cut(s)	194, 223
AfiI	CCNNNNNNNGG	2 cut(s)	260, 310
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	61, 170
AluI	AGCT	2 cut(s)	61, 170
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	90, 238
ApeKI	GCWGC	3 cut(s)	22, 170, 250
AsuHPI	GGTGA	2 cut(s)	35, 191
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	9, 157, 237
BccI	CCATC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	4 cut(s)	23, 171, 251, 254
BlsI	GCNGC	4 cut(s)	24, 172, 252, 255
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	282, 302
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	265
Bsa29I	ATCGAT	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 310
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	260, 310
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	9, 157, 237
BshFI	GGCC	2 cut(s)	92, 240
BshNI	GGYRCC	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	260, 310
BsnI	GGCC	2 cut(s)	92, 240
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	145, 211, 215
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	92, 240
BspDI	ATCGAT	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	282, 302
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	145, 211, 215
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	148, 214, 218
BstMBI	GATC	3 cut(s)	145, 211, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	9, 157, 237
Bsu15I	ATCGAT	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	92, 240
BsuTUI	ATCGAT	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	193, 222
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	7 cut(s)	22, 61, 92, 164, 170, 240, 250
CviKI_1	RGCY	7 cut(s)	22, 61, 92, 164, 170, 240, 250
CviQI	GTAC	2 cut(s)	193, 222
DpnI	GATC	3 cut(s)	147, 213, 217
DpnII	GATC	3 cut(s)	145, 211, 215
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	144, 184
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	153
FaiI	YATR	1 cut(s)	151
FatI	CATG	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	23, 171, 251, 254
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	4 cut(s)	23, 171, 251, 254
GluI	GCNGC	4 cut(s)	23, 171, 251, 254
HaeIII	GGCC	2 cut(s)	92, 240
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	2 cut(s)	35, 191
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	77, 79, 264
HpyCH4IV	ACGT	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	145, 211, 215
LguI	GCTCTTC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	15, 24, 42, 120, 174, 231, 245, 263, 293
Lsp1109I	GCAGC	3 cut(s)	9, 157, 237
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	323
MalI	GATC	3 cut(s)	147, 213, 217
MboI	GATC	3 cut(s)	145, 211, 215
MboII	GAAGA	2 cut(s)	68, 190
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	155
MnlI	CCTC	3 cut(s)	103, 230, 304
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	145, 211, 215
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	2 cut(s)	282, 302
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	24, 172, 252, 255
Psp124BI	GAGCTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	282, 302
RsaI	GTAC	2 cut(s)	194, 223
RsaNI	GTAC	2 cut(s)	193, 222
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	4 cut(s)	23, 171, 251, 254
Sau3AI	GATC	3 cut(s)	145, 211, 215
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	41, 63, 78, 90, 109, 172, 326
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	22, 170, 250
TspDTI	ATGAA	2 cut(s)	17, 69
TspGWI	ACGGA	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.