FvH4_5g30540
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000371
Physical Location & Seq
Forward (+)
21403630 .. 21404803
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30540.t1

Sequence Viewer

Length: 1119 bp
ATGGGTCGTGGTATGCCTGTGGGTTTCAGATTCCACCCGACCGATCAAGAGCTGATCGGCCACTACCTTTCCACCAAAACCAACCCCAATTCGGACCCCTGGGTTTCAAACATTGATTTGTACGGGGAGGCAGAACCTTGGACGATTTGGGAAGACCACGGCGGACCGCTTCTTGACGATGAAGATCTCATCTTCTTCACTAAGCTTAAGAAGAACAAGCAGGGCCACCGTATTTGTCGAAGAATTGGATCCGGTACTTGGAGCCAAGGCGAACTCCCCAAACCCATTTTTGCCAAGAACAACCAAGAAACCCCAATTGGGAAAAAGACCAAGTTGAGCAAGAGACCATCACCAAGTCAAAAGTGTCAAGATGGCCGAAACCCCAAGTCTTTGAGACTTTCTGATGATTCAATTACAACTAATGAGGCTGCTCTGTCTTTGAACCAGAGGAGGAGGGGGCCTAATCCTGACAGGCAATTCGACACTCATGATCAGGAACATTTGTTGTTACAGGGTAATACTAATGCTGGTCATGTTGATTATGCATTGGAGCAACTACAAAGGGATGCCGTTTCAGAACACCAACAACAACACACATGTTCGTCATCATTTGCGCAACCAAAAACTACTGTCGTTGATGTGTTCGTGTCTGAAAATGCACACTCAGAGGGTACTGATGATTGCCTTGGTGTTCCATTGGAGGTAGCACAAGGGGATACACTATTTCCTGCCCTCTCAGAACAACAAACATCATTCATGTCACAGATGCAGGCCATTCATTCGGAAGAAAATGAGAGTGGACATGCACGGTTAGAGGATACCGATTGGCATGGTATTGAACTGGAGGCCATTCCCGAAAGGCAACAACCTGCAGCAGATCAAAATGCTTTGGTTATTAGCAAGCTACAAGTCAGTACCAATGATGAAGAATTCAGTATTGCTTGTGATGATTTCAATAAACTTCCTATGGATGACGCCTACATTAACTCTTTTGAATTCAGCAACTACATCTTTGGGGATGAGTTCTTGTCAGGAGGGGATGACATTGGTACAGCAGATATACTACAAGGCTCATCATCATTTTCAGACCTGCTTGAAGATCAGCATCATCAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

373

Amino Acids

41.61

Weight (kDa)

4.74

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 112 3.5e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 615
Acc36I ACCTGC 2 cut(s) 877, 1098
AciI CCGC 2 cut(s) 162, 167
AclWI GGATC 2 cut(s) 243, 256
AcoI YGGCCR 2 cut(s) 58, 373
AcsI RAATTY 2 cut(s) 929, 995
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 5 cut(s) 122, 256, 673, 916, 1051
AfiI CCNNNNNNNGG 3 cut(s) 91, 258, 318
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 7 cut(s) 108, 411, 442, 839, 955, 995, 1097
AjnI CCWGG 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 3 cut(s) 52, 205, 904
AluI AGCT 3 cut(s) 52, 205, 904
Alw26I GTCTC 2 cut(s) 337, 388
AlwI GGATC 2 cut(s) 243, 256
AoxI GGCC 6 cut(s) 58, 223, 373, 458, 771, 846
ApeKI GCWGC 2 cut(s) 428, 872
ApoI RAATTY 2 cut(s) 929, 995
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 4 cut(s) 94, 164, 223, 458
AsuHPI GGTGA 1 cut(s) 342
AvaII GGWCC 2 cut(s) 94, 164
BamHI GGATCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 415, 884
BccI CCATC 2 cut(s) 355, 365
BceAI ACGGC 2 cut(s) 175, 554
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 2 cut(s) 709, 811
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 337, 388
BfmI CTRYAG 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 206
BfuAI ACCTGC 2 cut(s) 877, 1098
BfuI GTATCC 2 cut(s) 709, 811
BglII AGATCT 1 cut(s) 184
BisI GCNGC 2 cut(s) 429, 873
BlsI GCNGC 2 cut(s) 430, 874
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 94, 164
BmgT120I GGNCC 4 cut(s) 94, 164, 223, 458
BmiI GGNNCC 4 cut(s) 96, 250, 263, 459
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 3 cut(s) 556, 756, 1114
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 863
BsaBI GATNNNNATC 2 cut(s) 183, 1104
BsaHI GRCGYC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 6 cut(s) 98, 99, 137, 157, 265, 685
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 258, 318
Bse1I ACTGG 1 cut(s) 846
Bse8I GATNNNNATC 2 cut(s) 183, 1104
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 6 cut(s) 98, 99, 137, 157, 265, 685
BseGI GGATG 4 cut(s) 571, 976, 1024, 1045
BseJI GATNNNNATC 2 cut(s) 183, 1104
BseLI CCNNNNNNNGG 3 cut(s) 91, 258, 318
BseMII CTCAG 2 cut(s) 678, 750
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 2 cut(s) 463, 466
BseXI GCAGC 2 cut(s) 415, 884
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 6 cut(s) 60, 225, 375, 460, 773, 848
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 91, 258, 318
BsmAI GTCTC 2 cut(s) 337, 388
BsnI GGCC 6 cut(s) 60, 225, 375, 460, 773, 848
Bso31I GGTCTC 1 cut(s) 337
Bsp143I GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
BspACI CCGC 2 cut(s) 162, 167
BspANI GGCC 6 cut(s) 60, 225, 375, 460, 773, 848
BspCNI CTCAG 2 cut(s) 677, 749
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 4 cut(s) 96, 250, 263, 459
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 2 cut(s) 877, 1098
BspPI GGATC 2 cut(s) 243, 256
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 846
BssECI CCNNGG 6 cut(s) 98, 99, 137, 157, 265, 685
BssMI GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
BssNI GRCGYC 1 cut(s) 975
BssT1I CCWWGG 3 cut(s) 137, 265, 685
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 230, 631, 810
BstACI GRCGYC 1 cut(s) 975
BstAFI CTTAAG 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 771, 902
BstDEI CTNAG 3 cut(s) 201, 664, 736
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 571, 976, 1024, 1045
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 7 cut(s) 46, 57, 187, 251, 493, 880, 1102
BstMAI GTCTC 2 cut(s) 337, 388
BstMBI GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
BstMCI CGRYCG 1 cut(s) 42
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 600, 806
BstSCI CCNGG 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 870
BstV1I GCAGC 2 cut(s) 415, 884
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 184, 248
BstYI RGATCY 2 cut(s) 184, 248
BsuI GTATCC 2 cut(s) 709, 811
BsuRI GGCC 6 cut(s) 60, 225, 375, 460, 773, 848
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 571, 976, 1024, 1045
BveI ACCTGC 2 cut(s) 877, 1098
Cac8I GCNNGC 2 cut(s) 771, 902
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 4 cut(s) 94, 164, 223, 458
CpoI CGGWCCG 1 cut(s) 164
CseI GACGC 1 cut(s) 983
Csp6I GTAC 5 cut(s) 121, 255, 672, 915, 1050
CspCI CAANNNNNGTGG 2 cut(s) 215, 250
CspI CGGWCCG 1 cut(s) 164
CviAII CATG 6 cut(s) 488, 533, 597, 757, 803, 830
CviQI GTAC 5 cut(s) 121, 255, 672, 915, 1050
DdeI CTNAG 3 cut(s) 201, 664, 736
DpnI GATC 7 cut(s) 45, 56, 186, 250, 492, 879, 1101
DpnII GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
EaeI YGGCCR 2 cut(s) 58, 373
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 3 cut(s) 137, 265, 685
Eco31I GGTCTC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 94, 164
EcoO109I RGGNCCY 1 cut(s) 458
EcoRI GAATTC 2 cut(s) 929, 995
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 3 cut(s) 137, 265, 685
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 3 cut(s) 137, 265, 685
FaeI CATG 6 cut(s) 491, 536, 600, 760, 806, 833
FatI CATG 6 cut(s) 487, 532, 596, 756, 802, 829
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 429, 873
FokI GGATG 4 cut(s) 578, 983, 1031, 1052
Fsp4HI GCNGC 2 cut(s) 429, 873
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 1 cut(s) 615
GluI GCNGC 2 cut(s) 429, 873
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 6 cut(s) 60, 225, 375, 460, 773, 848
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 983
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 6 cut(s) 491, 536, 600, 760, 806, 833
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 30, 407
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 800
Hpy188I TCNGA 9 cut(s) 29, 94, 403, 577, 652, 667, 739, 784, 1087
Hpy188III TCNNGA 8 cut(s) 47, 173, 368, 467, 488, 494, 854, 1032
Hpy8I GTNNAC 1 cut(s) 800
HpyCH4III ACNGT 3 cut(s) 230, 631, 810
HpyCH4V TGCA 5 cut(s) 545, 659, 769, 806, 872
HpyF3I CTNAG 3 cut(s) 201, 664, 736
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 6 cut(s) 491, 536, 600, 760, 806, 833
HspAI GCGC 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
LmnI GCTCC 2 cut(s) 261, 550
Lsp1109I GCAGC 2 cut(s) 415, 884
LweI GCATC 3 cut(s) 556, 756, 1114
MaeIII GTNAC 2 cut(s) 507, 759
MalI GATC 7 cut(s) 45, 56, 186, 250, 492, 879, 1101
MboI GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
MboII GAAGA 9 cut(s) 164, 184, 187, 194, 223, 252, 797, 938, 1109
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 2 cut(s) 184, 248
MluCI AATT 7 cut(s) 88, 243, 315, 411, 476, 929, 995
Mph1103I ATGCAT 1 cut(s) 547
MseI TTAA 2 cut(s) 207, 984
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 100
NdeII GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
NlaIII CATG 6 cut(s) 491, 536, 600, 760, 806, 833
NlaIV GGNNCC 4 cut(s) 96, 250, 263, 459
NmuCI GTSAC 1 cut(s) 759
NsbI TGCGCA 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 2 cut(s) 600, 806
PagI TCATGA 1 cut(s) 487
PasI CCCWGGG 1 cut(s) 99
PciI ACATGT 1 cut(s) 596
PfeI GAWTC 2 cut(s) 30, 407
PkrI GCNGC 2 cut(s) 430, 874
PscI ACATGT 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 4 cut(s) 96, 250, 263, 459
PspPI GGNCC 4 cut(s) 94, 164, 223, 458
PstI CTGCAG 1 cut(s) 874
PsuI RGATCY 2 cut(s) 184, 248
RsaI GTAC 5 cut(s) 122, 256, 673, 916, 1051
RsaNI GTAC 5 cut(s) 121, 255, 672, 915, 1050
Rsr2I CGGWCCG 1 cut(s) 164
RsrII CGGWCCG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 207, 984
SatI GCNGC 2 cut(s) 429, 873
Sau3AI GATC 7 cut(s) 43, 54, 184, 248, 490, 877, 1099
Sau96I GGNCC 4 cut(s) 94, 164, 223, 458
ScrFI CCNGG 1 cut(s) 100
SetI ASST 8 cut(s) 54, 69, 139, 207, 705, 871, 906, 1092
SfaNI GCATC 3 cut(s) 556, 756, 1114
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 2 cut(s) 94, 164
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 7 cut(s) 88, 243, 315, 411, 476, 929, 995
SsiI CCGC 2 cut(s) 162, 167
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 3 cut(s) 137, 265, 685
TaaI ACNGT 3 cut(s) 230, 631, 810
TaqI TCGA 2 cut(s) 238, 480
TaqII GACCGA 1 cut(s) 56
TasI AATT 7 cut(s) 88, 243, 315, 411, 476, 929, 995
TfiI GAWTC 2 cut(s) 30, 407
Tru1I TTAA 2 cut(s) 207, 984
Tru9I TTAA 2 cut(s) 207, 984
TseFI GTSAC 1 cut(s) 759
TseI GCWGC 2 cut(s) 428, 872
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 4 cut(s) 195, 745, 767, 939
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 94, 164
XapI RAATTY 2 cut(s) 929, 995
XceI RCATGY 2 cut(s) 600, 806
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.