Rh1BG128700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000371
Physical Location & Seq
Forward (+)
21708384 .. 21709187
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG128700.1

Sequence Viewer

Length: 804 bp
ATGGAGGAGTATAGCACTGTTAATGATTCAAGTTCTTCTTCTGCACATGATGATTATGTGATTTGCCGACTCCAACGGAACAACACCAACAGATCATCATCATATGGACAAAGAGGACCAATAAGAAATAATAATGATAACAAGAGGAAGTCTCAAGATGATGATGATGATCACCATCCAAAGCCTAGGAAAAAGCCCAAGTCTTTGACAGTTGCTGATCCACAACCTGTGTTTACAACCAGTGAGGCTAGAAAGACTGTGTCTTTAAAAATGAACCAGAGTCCTAATCCTGAGCAGCAATTTGATACAGTGGAAATGTTATATGATGAGCTGTTTGGCAATGATGATGATCAGATGGTTCCTCATGATCAGGAATATGAGACTCAGCATTTGCTGTTAGAGGGTACTACTGATGACCACATTGACTATGCATTGGAGGTAGTAGAAGGGGATACACTACCCCCTGCCCTCTCAGAACAACACACATGTTCATCATTAACTGTGCAGCCTAGTCCTACCGAAGAAGATACATATACAGTACCTCATATTGGTTCAGACTTGCACCAACCAAGAGACCAAAATGAGTTGATTACTAATGAGGGACAAAGCAGTACAAGTATTGGTATCGGTATGTCCGAGGATAGTCAGGATACTGACTGGCTTGATCTTGCATCGGAAGAAGTAGAAAGGGATACAATATCCCTTGCACCCTCAGAACAACAAATGTCATTGACTTCACAGATGCTGTCCAATCCTTCGGAAGAAAATATATATACATGCCACATGTACCTCACATTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

4.32

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000371)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30540 FvH4_5g31040 FvH4_5g34901 FvH4_5g34902 FvH4_5g35290 FvH4_6g26310 FvH4_6g26330 FvH4_6g51360
malus_domestica MD03G1130400.v1.1 MD05G1005400.v1.1 MD05G1030600.v1.1 MD11G1074200.v1.1 MD11G1075500.v1.1 MD11G1075600.v1.1 MD11G1138500.v1.1 MD13G1124900.v1.1 MD15G1393000.v1.1
prunus_persica Prupe.1G063700_v2.0.a1 Prupe.1G106100_v2.0.a1 Prupe.2G196800_v2.0.a1 Prupe.2G202600_v2.0.a1 Prupe.6G057300_v2.0.a1 Prupe.6G092100_v2.0.a1 Prupe.6G098300_v2.0.a1 Prupe.6G098400_v2.0.a1 Prupe.6G112000_v2.0.a1 Prupe.8G095200_v2.0.a1 Prupe.8G097100_v2.0.a1
pyrus_communis pycom03g04400 pycom03g04810 pycom04g03340 pycom11g06160 pycom11g06170 pycom11g06280 pycom12g00070
rosa_chinensis RchiOBHm_Chr2g0126751 RchiOBHm_Chr5g0047081 RchiOBHm_Chr7g0230611 RchiOBHm_Chr7g0236441 RchiOBHm_Chr7g0236481 RchiOBHm_Chr7g0236511
rosa_laevigata RLG00000001105 RLG00000001256 RLG00000018919 RLG00000018920 RLG00000022153
rosa_multiflora Rmu_co8144300.1_g000001 Rmu_sc0000007.1_g000005 Rmu_sc0000007.1_g000006 Rmu_sc0000070.1_g000054 Rmu_sc0000588.1_g000007 Rmu_sc0002222.1_g000014 Rmu_sc0002449.1_g000028 Rmu_sc0003747.1_g000001 Rmu_sc0005733.1_g000007 Rmu_sc0007784.1_g000006 Rmu_sc0011173.1_g000003 Rmu_sc0011236.1_g000004 Rmu_sc0014124.1_g000001
rosa_roxburghii Rroxscaffold_2G00116990 Rroxscaffold_4G00294750 Rroxscaffold_4G00294760 Rroxscaffold_4G00294800
rosa_rugosa Rorug02G0264600 Rorug02G0264600 Rorug02G0564800 Rorug02G0564900
rosa_samantha Rh1AG295700 Rh1AG301300 Rh1BG128600 Rh1BG128700 Rh1BG128800 Rh1CG282300 Rh1DG164800 Rh1DG164900 Rh2AG321700 Rh2AG321800 Rh2AG644400 Rh2AG644500 Rh2BG655200 Rh2BG655300 Rh2CG309500 Rh2CG309600 Rh2CG620500 Rh2DG668700 Rh3BG170600 Rh7AG434800 Rh7BG127300 Rh7BG423300 Rh7BG423700 Rh7BG424100 Rh7BG424200 Rh7CG383900 Rh7CG432200 Rh7CG453500 Rh7DG368300 Rh7DG409100 Rh7DG438400
rosa_wichuraiana Rw0G020640 Rw2G026070 Rw2G026080 Rw5G020070 Rw7G037290 Rw7G037330 Rw7G037540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AfaI GTAC 4 cut(s) 406, 540, 613, 788
AfiI CCNNNNNNNGG 2 cut(s) 548, 796
AflIII ACRYGT 2 cut(s) 485, 783
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 3 cut(s) 156, 374, 567
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 2 cut(s) 215, 745
ApeKI GCWGC 2 cut(s) 295, 505
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspA2I CCTAGG 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 185
BbvI GCAGC 2 cut(s) 307, 517
BccI CCATC 2 cut(s) 183, 349
BciVI GTATCC 3 cut(s) 445, 643, 685
BclI TGATCA 3 cut(s) 169, 349, 367
BcoDI GTCTC 3 cut(s) 156, 374, 567
BfaI CTAG 3 cut(s) 186, 249, 510
BfuI GTATCC 3 cut(s) 445, 643, 685
BisI GCNGC 2 cut(s) 296, 506
BlnI CCTAGG 1 cut(s) 185
BlsI GCNGC 2 cut(s) 297, 507
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 2 cut(s) 680, 732
BplI GAGNNNNNCTC 2 cut(s) 136, 168
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 138
BsaBI GATNNNNATC 4 cut(s) 97, 168, 174, 348
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 185, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 796
Bse1I ACTGG 2 cut(s) 240, 662
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 4 cut(s) 97, 168, 174, 348
BseDI CCNNGG 2 cut(s) 185, 636
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 4 cut(s) 97, 168, 174, 348
BseLI CCNNNNNNNGG 2 cut(s) 548, 796
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 282, 398, 486, 726
BseNI ACTGG 2 cut(s) 240, 662
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 307, 517
BsgI GTGCAG 2 cut(s) 27, 524
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 548, 796
BsmAI GTCTC 3 cut(s) 156, 374, 567
BsmFI GGGAC 1 cut(s) 615
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 6 cut(s) 92, 169, 217, 349, 367, 664
BspCNI CTCAG 4 cut(s) 283, 397, 485, 725
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 2 cut(s) 240, 662
BssECI CCNNGG 2 cut(s) 185, 636
BssMI GATC 6 cut(s) 92, 169, 217, 349, 367, 664
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
BstDEI CTNAG 4 cut(s) 291, 384, 472, 712
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 6 cut(s) 95, 172, 220, 352, 370, 667
BstMAI GTCTC 3 cut(s) 156, 374, 567
BstMBI GATC 6 cut(s) 92, 169, 217, 349, 367, 664
BstNSI RCATGY 3 cut(s) 489, 780, 787
BstV1I GCAGC 2 cut(s) 307, 517
BsuI GTATCC 3 cut(s) 445, 643, 685
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 15, 247, 315
CaiI CAGNNNCTG 2 cut(s) 215, 745
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 4 cut(s) 405, 539, 612, 787
CviAII CATG 5 cut(s) 47, 365, 486, 777, 784
CviJI RGCY 6 cut(s) 184, 196, 248, 331, 508, 661
CviKI_1 RGCY 6 cut(s) 184, 196, 248, 331, 508, 661
CviQI GTAC 4 cut(s) 405, 539, 612, 787
DdeI CTNAG 4 cut(s) 291, 384, 472, 712
DpnI GATC 6 cut(s) 94, 171, 219, 351, 369, 666
DpnII GATC 6 cut(s) 92, 169, 217, 349, 367, 664
DraI TTTAAA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 5 cut(s) 50, 368, 489, 780, 787
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 615
FatI CATG 5 cut(s) 46, 364, 485, 776, 783
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 3 cut(s) 169, 349, 367
Fnu4HI GCNGC 2 cut(s) 296, 506
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 296, 506
FspBI CTAG 3 cut(s) 186, 249, 510
GluI GCNGC 2 cut(s) 296, 506
Hin1II CATG 5 cut(s) 50, 368, 489, 780, 787
HinfI GANTC 4 cut(s) 26, 69, 280, 382
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 7 cut(s) 354, 475, 556, 637, 676, 715, 760
Hpy188III TCNNGA 5 cut(s) 155, 290, 365, 371, 647
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 440, 765
HpyCH4III ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
HpyCH4V TGCA 6 cut(s) 44, 431, 505, 562, 671, 707
HpyF3I CTNAG 4 cut(s) 291, 384, 472, 712
Hsp92II CATG 5 cut(s) 50, 368, 489, 780, 787
Ksp22I TGATCA 3 cut(s) 169, 349, 367
Kzo9I GATC 6 cut(s) 92, 169, 217, 349, 367, 664
LpnPI CCDG 8 cut(s) 240, 253, 290, 303, 356, 477, 632, 643
Lsp1109I GCAGC 2 cut(s) 307, 517
LweI GCATC 2 cut(s) 680, 732
MaeI CTAG 3 cut(s) 186, 249, 510
MalI GATC 6 cut(s) 94, 171, 219, 351, 369, 666
MboI GATC 6 cut(s) 92, 169, 217, 349, 367, 664
MboII GAAGA 6 cut(s) 27, 30, 533, 536, 689, 773
MluCI AATT 1 cut(s) 299
MlyI GAGTC 3 cut(s) 63, 289, 376
MmeI TCCRAC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 3 cut(s) 21, 266, 497
NdeI CATATG 1 cut(s) 103
NdeII GATC 6 cut(s) 92, 169, 217, 349, 367, 664
NlaIII CATG 5 cut(s) 50, 368, 489, 780, 787
NlaIV GGNNCC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 3 cut(s) 489, 780, 787
PagI TCATGA 1 cut(s) 364
PciI ACATGT 2 cut(s) 485, 783
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PfeI GAWTC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 297, 507
PleI GAGTC 3 cut(s) 63, 288, 376
PpsI GAGTC 3 cut(s) 63, 288, 376
PscI ACATGT 2 cut(s) 485, 783
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 2 cut(s) 215, 745
PsyI GACNNNGTC 1 cut(s) 259
RsaI GTAC 4 cut(s) 406, 540, 613, 788
RsaNI GTAC 4 cut(s) 405, 539, 612, 787
SaqAI TTAA 3 cut(s) 21, 266, 497
SatI GCNGC 2 cut(s) 296, 506
Sau3AI GATC 6 cut(s) 92, 169, 217, 349, 367, 664
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 3 cut(s) 63, 289, 376
SetI ASST 5 cut(s) 229, 333, 441, 544, 792
SfaNI GCATC 2 cut(s) 680, 732
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 299
SspMI CTAG 3 cut(s) 186, 249, 510
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 6 cut(s) 19, 211, 259, 310, 502, 538
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 21, 266, 497
Tru9I TTAA 3 cut(s) 21, 266, 497
TscAI CASTG 3 cut(s) 22, 247, 315
TseI GCWGC 2 cut(s) 295, 505
TspDTI ATGAA 2 cut(s) 287, 480
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 22, 247, 315
Tth111I GACNNNGTC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 116
XceI RCATGY 3 cut(s) 489, 780, 787
XmaJI CCTAGG 1 cut(s) 185
XspI CTAG 3 cut(s) 186, 249, 510
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.